KEGG   Candidatus Methylopumilus planktonicus: BN1208_0800
Entry
BN1208_0800       CDS       T03869                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mbat  Candidatus Methylopumilus planktonicus
Pathway
mbat03030  DNA replication
mbat03410  Base excision repair
mbat03420  Nucleotide excision repair
mbat03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mbat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN1208_0800 (ligA)
   03410 Base excision repair
    BN1208_0800 (ligA)
   03420 Nucleotide excision repair
    BN1208_0800 (ligA)
   03430 Mismatch repair
    BN1208_0800 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbat03032]
    BN1208_0800 (ligA)
   03400 DNA repair and recombination proteins [BR:mbat03400]
    BN1208_0800 (ligA)
Enzymes [BR:mbat01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BN1208_0800 (ligA)
DNA replication proteins [BR:mbat03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BN1208_0800 (ligA)
DNA repair and recombination proteins [BR:mbat03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BN1208_0800 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BN1208_0800 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BN1208_0800 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BN1208_0800 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 PTCB-BRCT HHH 5_3_exonuc
Other DBs
NCBI-ProteinID: CEZ19686
UniProt: A0A0D6EW08
Position
1:complement(731470..733485)
AA seq 671 aa
MKPDKENIKKKIQELIEKISVFDYQYYVLDNPSISDFEYDTIFRSLVDLENVNPELIRPD
SPSQRVGGKALAAFESVIHRQAMLSLNNAFEEAELMAFDKRIKDDIGIDEVEYAVEPKFD
GLAITLTYEDGIFVQGATRGDGYTGENVTHNLRTIRSIPTKLNHINPPKILEVRGEVLML
KKDFELLNQKQESLGEKKFANPRNAAAGSLRQLDPRITVTRPLTFFSYGLGISEPNLNLK
THTETIQLLKKINLPISDLSTSVKGIKGLQSFYEKVLKLRDSLAYDIDGVVYKVNSFNYQ
NELGFVSRAPRWAIAHKFPAEEALTEILDISVQVGRTGAITPVARLKPVFVGGVTVTNAT
LHNEDEMIRKDVHIGDIVSVRRAGDVIPEIVRVLLDKRPKTITKFKMPAECPECSSPLVR
IDDEAIIRCSGGLICPAQQKQSIIHFASRKAMDIEGLGDKSVEQLVTVGLIHGLPDIFKL
ELQQLVSLDRMAEKSGQNLLDAIEKSKLTSLPRFIYALGIRNVGESTAKDLAGFYGDLNE
IMKQTEESLQLVPDIGPTVAKSINDFFMQTKNREVIKSLIELGVHWPKYDIKKSASGIFA
TKTFVLTGTLPSMSRDDAKSIIEMNGGKVAGSVSKKTDYVVAGSDAGSKLATAQELGVKI
ISQEELLKLII
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgaagcctgataaagaaaatattaagaaaaaaattcaagagctaatcgaaaagataagc
gtattcgattatcaatattatgttttagacaatccttctatttcagattttgaatatgac
acaatctttaggtcacttgttgatttagagaatgtaaatccagagctaattcgacctgat
tcaccttcccaaagggtagggggtaaggcactagctgcttttgagagtgttattcatcgt
caagcaatgttatctctaaataacgctttcgaagaggctgagcttatggcttttgataag
cgcattaaagatgatattggtatcgatgaagtagaatatgcagttgagccgaaatttgac
ggacttgcgatcacactcacttatgaagatggtatttttgttcagggtgcgacacggggt
gatggctacacaggggaaaatgtcacacataatttaagaactattcgctcaataccaact
aaactcaatcatataaatccacctaaaattttagaagtgagaggtgaggtcttgatgctt
aaaaaagactttgaattactaaatcaaaagcaggaatctttaggcgaaaaaaaatttgca
aatccaagaaatgcggctgcagggagtttaaggcagcttgatcccagaataacagtaaca
agaccacttacatttttttcctatggtttgggcataagcgaacccaatttaaatttaaaa
actcatacggaaacaattcaacttctaaaaaaaattaatttacctatttctgatttatct
acaagtgttaaaggtataaaaggcttgcaaagtttttatgagaaggtattaaagttaaga
gactcactagcctatgacatcgatggcgtagtatataaagttaattcctttaattatcag
aatgagttgggttttgtatcacgcgctcctcgatgggctatcgcccataaatttccggcc
gaagaagcattgactgaaattttagacatcagtgttcaggttggtcgaacaggggctata
acgcctgtagcgcgattgaaaccagtcttcgtaggtggtgtaactgtgacgaatgcaacc
cttcataatgaggatgagatgattcgcaaagatgttcatattggagatattgtaagcgtt
cgaagagcaggggatgtgattcctgaaattgtaagggtgttacttgataagagacccaag
acaattacgaaatttaaaatgccagcagaatgtccggaatgtagctcacctcttgtcaga
attgatgatgaagcaatcattcgttgttcaggcggcctaatttgtcctgcacaacaaaag
caatctattattcattttgcatctcgaaaggctatggatatcgaaggattgggagataaa
tctgttgaacaattagttaccgtaggcctgattcacgggttacctgatattttcaaatta
gaacttcaacaattagtcagtcttgatcgtatggcagaaaaatccggtcaaaacttatta
gatgctattgaaaaaagcaaattaacatcattacctcgatttatttatgcgcttggtatt
aggaatgtaggtgagtctaccgccaaagatcttgctggtttctatggtgatttaaatgaa
attatgaaacaaacggaagaaagcttacagcttgtgcctgatattggccctacagttgca
aaatcgataaatgatttttttatgcaaactaaaaacagggaagttattaaatccttaata
gagctaggcgttcattggcctaaatacgatattaaaaaatctgcttcaggaatatttgca
actaaaacttttgtgctcactggaactttgccttcgatgtcacgtgacgatgctaaatca
atcattgagatgaacgggggaaaggtagcaggaagtgtttctaaaaaaactgattatgtt
gttgcgggatcagatgctggaagtaagctagccacggctcaagaacttggtgttaaaatt
atttcacaagaagagcttttgaaacttataatttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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