KEGG   Methylocystis bryophila: B1812_16500
Entry
B1812_16500       CDS       T04837                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mbry  Methylocystis bryophila
Pathway
mbry03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mbry00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B1812_16500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mbry03400]
    B1812_16500
Enzymes [BR:mbry01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B1812_16500
DNA repair and recombination proteins [BR:mbry03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B1812_16500
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: ARN82418
UniProt: A0A1W6MXU8
Position
complement(3449467..3451926)
AA seq 819 aa
MAGGVTQDPLARYRAKRDFAKSGEPQGQTARKGGRRLVVQRHFARREHFDLRLEIDGVLK
SWAVTRGPSANPSDKRLAVRTEDHPLEYGSFEGAIPKGEYGAGVVELWEDATYEPLNGDP
AQALAKGKLEFLTMGARMRGRWALIAMKKRDKAENWLLIKERDEFAESDDSLAERFDTSV
ASGRRREEIERGAPSRREAGQRETRAKRDTRQGARAPTPAFTPPQLCETSEQPPQGEDWL
FEMKYDGYRLELATGAEGAKAYTRTGLDWTTRFPTLARAAFELPCKNALLDGEAVVFDAR
GLSDFTALVAALEARDQAPIEYCAFDLLFLDGQDLRDLPLRSRKEKLRKLLEGHSGAIRY
AEEIRGGGASVFAQVTTAGAEGIVAKREDARYRSGRFEDWRKIKGDKREDVQIIGYRPSK
VGESFASLLAARETPEGLRYVGSIGTGYGARTREKLAPLIAEANKTKPAVSAAAKLPKDA
IYLEKPFSAEARFGGWTGEGLMRQARFLGVREDRARPRKSEPARNSKALTPVTHPDRVVY
PADGITKGDIAAYYERIWRRIAPHLHERVVSLVRAPDTIDNLFFQRHPLPGMNGSVLKVD
CDNQTYISLNGEAGLHAAAQFGAIEIHGWMARRDDLDHPDRLVFDLDPGDDVSFILVVQA
AADLRDYLAALGLRTWPMVTGGKGVHLAAPLDRSLAWPETEAFAEGFARVVAQQQRKRFV
ATMSKERRKGRIFIDWLRNKKKATAILPWSLRARSGAPVAAPVSWKTLASLDTGSAFNIH
SAPQLPNEWDAFDNARQSISRESRELIARVLAGGARRAL
NT seq 2460 nt   +upstreamnt  +downstreamnt
gtggcgggcggcgtaactcaagacccgcttgcgcgctaccgcgccaagcgcgatttcgcc
aagtccggcgagccgcaaggacagacggcgcgcaagggcggacggcgcctcgtcgtgcag
cgccactttgcgcgacgcgagcactttgatttgcggctagagatagacggcgttctcaag
agctgggcggtgacgcgcgggccttccgctaatcccagcgacaagcgcctcgctgtacgg
accgaggatcatccgctcgaatacggcagctttgaaggcgcaatccccaaaggcgaatat
ggcgccggcgtcgtggagctctgggaggatgcgacctatgaaccgctaaacggagatccg
gcccaggcgcttgccaagggcaagctcgaatttttgacgatgggcgcgcgcatgcgcgga
cgctgggccttgatcgccatgaagaagcgcgacaaggctgaaaattggctgctgatcaag
gaacgtgacgagttcgccgaatccgacgacagtctcgccgaacgcttcgacaccagcgtc
gcaagcgggcgcaggcgcgaggagatcgaacgcggcgccccgtcccggcgggaggctggg
caaagagaaacgcgcgcgaagcgtgacacccggcaaggcgctcgcgcgcccactccggct
ttcacgccgcctcagctttgcgaaacgtccgagcagccgccgcagggcgaggattggcta
ttcgagatgaaatacgacggctatcgcctcgagctcgccaccggcgccgagggcgcaaag
gcatatacgcgcacggggctcgattggacgactcgtttccccaccctggcgcgcgccgcc
ttcgagctgccttgtaagaacgcgctcctcgacggcgaggcggtcgtgttcgacgcgcgc
gggctctccgatttcacggcgctcgtcgccgccttggaagcgcgcgatcaagctcccatc
gagtactgcgctttcgatctcctcttcctggatggccaagacttgcgcgatctcccgctg
cgcagccgcaaggagaagctgcgcaagcttctcgaagggcacagcggagccattcgctac
gcggaagagattcgcggcggcggcgcgtccgttttcgcgcaggtgacaacggcgggcgcc
gaggggatcgtcgccaagcgagaagacgcgcgctaccgctcgggccgcttcgaggattgg
cggaagatcaagggcgataagcgcgaggatgtccaaatcatcggttatcggccctcgaag
gtcggcgagagcttcgcatcgcttctcgcggcaagagagacgcccgaaggcctgcgctat
gtggggagcatcggcacgggctatggcgcgcgcacgcgcgagaagctcgcgccgctcatc
gctgaggcgaacaaaacaaagccagcagtcagcgctgcagcaaaattgccgaaggacgcg
atctaccttgagaaacccttctcagcggaagcgcgatttggcggatggacgggagaaggc
cttatgcgtcaagcccgcttcctgggggtgagagaggatcgcgcgcgcccgcgaaagtcc
gagccggcgcggaacagtaaggcgttgacgccggtcacgcatcccgaccgcgtcgtctat
cccgctgacggaatcaccaagggcgacatcgccgcctattatgagaggatctggcgccgc
atcgcgccgcacctccacgaacgcgtcgtgagcctcgtgcgcgcgcccgacacaatcgac
aatctcttctttcagcgccatcccttgccgggcatgaacggaagcgtcttgaaggttgac
tgcgacaaccaaacatacatttcgctcaacggagaggcgggcctgcatgcagccgcgcag
ttcggcgcgatcgagattcatggatggatggcgcggcgcgacgatctcgatcatccggac
cggctggttttcgatctcgacccgggtgacgacgtgagcttcatcctggtcgtccaggcg
gccgcggatttgcgcgattatctcgccgcactcggcctgcgcacctggcctatggtcact
ggaggcaaaggcgtgcatctcgcagcgccccttgatcgcagcctagcctggcccgaaacg
gaagctttcgcggaaggcttcgcgcgcgttgtcgcacagcagcaacgcaagcgcttcgtg
gccaccatgagcaaggagaggcgcaaggggcgcatcttcattgactggctgcgcaacaag
aagaaggcgacagcgatcctaccgtggtcgctccgcgcgcgttccggcgcgccagtcgcg
gctccagtctcatggaaaacactggcctccctcgatacgggctccgctttcaacattcat
tcggcgccgcagcttccgaatgaatgggacgcgttcgacaacgcgcgtcagagcatttct
cgcgagtcgcgcgagctgatcgcgagagtgctagcgggcggcgcaaggagagcgctttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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