KEGG   Methylotuvimicrobium buryatense: EQU24_03845
Entry
EQU24_03845       CDS       T05995                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mbur  Methylotuvimicrobium buryatense
Pathway
mbur03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mbur00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EQU24_03845 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mbur03021]
    EQU24_03845 (rpoC)
   03400 DNA repair and recombination proteins [BR:mbur03400]
    EQU24_03845 (rpoC)
Enzymes [BR:mbur01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EQU24_03845 (rpoC)
Transcription machinery [BR:mbur03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EQU24_03845 (rpoC)
DNA repair and recombination proteins [BR:mbur03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EQU24_03845 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C Biotin_lipoyl_2 ApbA_C
Other DBs
NCBI-ProteinID: QCW84698
UniProt: A0A4P9UT23
Position
819636..823838
AA seq 1400 aa
MNFLKRQGRADDFDSIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
VSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMTLREIERVLYFESFVVLDPGVTPLNKGQLLTDDEYLDAVEQFGDDFVAKMGAEA
VFDLLKAIDLNGEINRLREEINGTNSETKIKKFSKRLKVIESLLSSKNRPEWMIMQVLPV
LPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLNRLLDLNAPDIIVRNEKRMLQESVD
ALLDNGRRGRAITGTNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQLRGLATTIKAAKKMVEREGAEVWDILEEVIREHPVLLN
RAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQLEARTLM
MATNNILSPASGEPIINPSQDVVLGLYFISREKVNAKGNGSIFVSTDEVHKALAFKSVDL
QAKIQLRITERIKTDRGVSEQKTYRVETTVGRALIWEIVPEGMPYEIVNCDMTKKNISRL
INYCYRHLGIKETVILADQLMYLGFRYATRSGVSFGIEDMAIPAKKEEIINTANSEVNEI
QRQYSSGLVTDGERYNKVVDIWSHANDQVAKVMMDGLGVEEIEDADGNKVTQKSFNSIFM
MAESGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDLVITGDDCGTTQGVSMTPIIEGGDVVEPLAERVLGRVV
INDVMDAAGEKVVVKSGTLLDEYWVSVLEENSVDQVYVRSVITCENRHGVCAACYGRDLA
RGHLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNVQVKSAGTVKLSNLK
TVTNREGNLVAVSRSGEIGIIDEYGRERERYKIPYGAVLSVQDGSKINGGEIIVNWDPHT
HPVITEVDGVVSLFDFMDGVTVQKQADEVTGLSSLVVTDPKQRGSAGKDLRPMVKLMDAA
GETIYLPGTEIPAQYFLPTGAIVSIKDGHEVKVGDVLARIPQESSKTRDITGGLPRVADL
FEARKTKDPAILAETTGTISFGKETKGKQRVIITDASGEQYETLVPKWRHITVFEGEHVE
KGETIAEGELTPHDILRLRGIEDLANYLVKEIQDVYRLQGVKINDKHIEAIIRQMLRKVE
ITAAGDTEFLKGDQVERAYVREINEKMEAEGKIPASFESILLGITKASLATESFISAASF
QETTRVLTDAAVRGLSDGLHGLKENVIVGRLIPAGTGLAYHEQRRKRRNKEIEVSSDGDN
VSSVDAGDVEEALKQALNTE
NT seq 4203 nt   +upstreamnt  +downstreamnt
atgaactttttaaagcgccaaggtcgcgccgatgattttgattcaattcgcataggtttg
gcgtctcctgacatgattcgttcgtggtcttacggagaagttaaaaagcctgaaacaata
aattatcgaacttttaagccggaacgagatggattgttttgtgccaaaatttttggccct
gtgagcgattatgaatgtttatgcggaaaatataaaagactgaaacacagaggcgttatc
tgtgagaaatgcggtgttgaagtcacgctttcgaaagtgcgtcgagaaagaatgggacac
attgaattggccagtccggtcgctcatatttggtttttaaagtccttgccatcgaggatt
gcgctgctactagacatgacgcttcgtgaaattgagcgcgtcttgtatttcgagtcattc
gttgtgcttgatccgggcgtaacgccgcttaataaagggcagttgctgaccgatgacgag
tatctcgatgccgtcgagcaatttggcgatgatttcgttgcgaaaatgggtgccgaagcc
gtttttgatttactcaaagcgatcgatctgaacggcgaaatcaatcgtttacgcgaagag
atcaacggtaccaattcagaaactaagattaaaaagttttctaaacgcttaaaagtaatc
gaatcgctgttgagctctaaaaatcgtcctgaatggatgattatgcaagtattgccggtt
ttgcctccggaattgagacctttggtgcctttagatggcgggcgatttgccacgtcggat
ttaaacgatctctatcgtcgcgtcattaacaggaataaccggctcaatcgtttgttggat
ttaaacgcgccggatattatcgttcgaaacgaaaagcgaatgttgcaagagtcggtcgat
gctttgctcgataacggccgtagaggtagggcaatcaccggtaccaatagaaggccgctt
aaatctcttgccgatatgattaagggtaagcaaggccgtttcaggcaaaacctgttgggt
aaacgtgtcgattattccgggcgttccgttatcgtagtcgggccgaccctgcggttacac
cagtgcgggttgcctaaaaaaatggctttggaattgttcaagccgttcatctttagcaaa
ttgcaattaagagggcttgccacaaccattaaagccgcgaagaaaatggttgagcgagaa
ggtgccgaggtttgggatattctcgaagaagtcattcgcgagcatccggttttgttaaac
agggcgccgaccttgcatcgcttagggatacaagcgttcgagccaatcttaatcgaaggt
aaagcgatacagttgcatcctttggtttgtagtgcttttaatgccgattttgacggcgac
caaatggcggtgcatgtcccgttatcgatagaggctcaacttgaagccagaacgttgatg
atggcgaccaataatattttgtctccggcaagcggtgagccgattattaacccgtctcag
gacgtggttttagggctctattttataagtcgagagaaagtcaatgccaaagggaacgga
tcgatctttgtttcaacagacgaagtacataaagccttagcatttaaaagtgtcgactta
caggccaagattcaattaagaattactgaaagaataaagaccgatagaggcgtttccgaa
caaaaaacctatcgcgtcgaaacgacggttggccgagcattgatctgggaaattgttccc
gaaggtatgccgtacgagatagtcaattgcgatatgacgaagaaaaatatatcgcgactg
atcaattattgctaccggcatttaggtatcaaggaaacagtcattttggccgaccaattg
atgtatctcggatttcgttatgcaacacgttccggtgtttcatttggcatagaagatatg
gcgataccggcaaaaaaagaagaaatcatcaatacggctaattcggaagttaacgagata
cagcggcaatactcgtctggtttagtaactgacggtgagcgatacaacaaagtagttgac
atctggtcacacgcaaatgatcaagttgcgaaagtcatgatggatggattgggcgttgag
gaaatcgaagatgccgatggaaacaaggttactcagaaatcgttcaactcaattttcatg
atggccgaatcaggtgctcggggttccgctgcacagattagacagttggccggtatgcgc
ggcttgatggccaagccggacggttcgattatcgaaacgccgattaccgctaatttcagg
gaaggtctagacgtattacagtactttatttcgactcacggcgcacggaaagggcttgcc
gatacagctttgaaaacagccaactcgggttatttgacgcggcgtttggtcgatgtcgct
caggatttggttattacgggcgacgattgcggaacgacgcaaggggtgtcgatgacgccg
attatcgaaggcggcgatgttgtcgagccattggctgagcgtgtgttaggtcgtgtagtc
attaacgacgtcatggatgctgcaggcgaaaaagtggtcgttaaaagtggaaccttgctt
gatgaatactgggtgtcggtgcttgaagaaaatagtgtcgatcaagtctatgtgcgttcg
gttattacttgtgaaaatcgtcatggcgtctgtgccgcatgttatggtcgagacttagct
agagggcatttagtcaatagcggcgaagcagtgggtgtcattgctgcacaatccatcggc
gagccggggacgcagttgactatgcgtactttccatattggcggtgcagcttcgagatcg
gcagcgatcagtaatgtgcaagttaaatcggccggaaccgttaagttgagtaacctcaag
accgttacgaatcgcgaagggaatttggttgcggtttctagatccggtgaaatcggtatc
atcgacgaatatggccgtgaacgtgagcgctataaaattccttatggtgcggttttgtcg
gtccaggatggcagtaaaattaatggcggagagattattgtcaactgggatccgcataca
catccggtaattaccgaagttgatggtgtagttagcctattcgactttatggatggcgta
acggttcaaaaacaagcggacgaggtgacagggttaagttccttggtggtgaccgatccc
aaacaaaggggcagtgccggtaaagatttacgcccaatggttaagctaatggatgccgcc
ggagagacgatttatcttccaggaacagagattcccgcgcagtacttcctgccgaccgga
gcaattgtcagcatcaaggatgggcacgaggttaaagtcggtgatgttttggcgaggatt
cctcaagaatcgagtaaaacgcgcgatatcaccggtggtttacctcgcgttgccgattta
tttgaagcaagaaaaaccaaggatccggcgattttagcggaaacaaccggcacaatatcc
ttcggtaaagagactaaaggcaagcaacgggtaattattaccgatgcaagcggagagcaa
tacgaaacattggtaccgaaatggcggcacattactgtgttcgaaggtgagcacgtcgag
aagggtgaaactattgctgaaggcgaattgacgccgcacgatatcttaagattgcgtggc
attgaggatctagcaaattatttagtgaaagagattcaagacgtttatcgattacaaggt
gtaaaaatcaatgataaacatattgaagcaatcattagacagatgcttcgtaaagttgaa
atcaccgcggccggcgacacggaatttttgaaaggagatcaagtggagagagcctatgtg
cgtgaaatcaatgaaaaaatggaagcggaaggcaagataccggcaagttttgaatctatt
ttattaggcatcactaaagcgtcgttagcaacagagtcatttatttcggccgcttctttc
caggaaacgactcgagtattgacggatgcggcggtgcgtgggttgagcgacggtcttcat
ggcttgaaggaaaatgtcatcgttgggcgtttgatacctgcgggtactggattggcctat
catgagcaaagaagaaaacgacgcaacaaagaaatagaagtttcatctgatggtgataat
gtttcatcagtagatgcaggtgatgtggaggaggcgttaaagcaagccttaaacactgaa
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system