KEGG   Mus caroli (Ryukyu mouse): 110294658
Entry
110294658         CDS       T05910                                 
Symbol
Polr2j
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03020  RNA polymerase
mcal03420  Nucleotide excision repair
mcal05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110294658 (Polr2j)
  09124 Replication and repair
   03420 Nucleotide excision repair
    110294658 (Polr2j)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    110294658 (Polr2j)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcal03021]
    110294658 (Polr2j)
   03400 DNA repair and recombination proteins [BR:mcal03400]
    110294658 (Polr2j)
Transcription machinery [BR:mcal03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     110294658 (Polr2j)
DNA repair and recombination proteins [BR:mcal03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      110294658 (Polr2j)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 110294658
NCBI-ProteinID: XP_021018687
Ensembl: MGP_CAROLIEiJ_G0027851
UniProt: A0A6P5PRS4
Position
5:128968290..128974913
AA seq 117 aa
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaacgcccctccggccttcgagtcgttcttgctcttcgagggcgagaagaaaatcacc
attaacaaggacactaaggttcccaacgcctgcttgttcaccatcaacaaagaagaccac
actctggggaacatcattaaatcccagctgttgaaggacccgcaggtgctgtttgctggc
tacaaagtccctcaccccttggagcacaagatcatcattcgtgtgcagaccaccccagac
tacagtccccaggaggctttcaccaatgccatcacagacctcatcagcgagctctccctt
ctggaggagcgattccgggtggccatcaaggacaagcaagaaggaattgagtag

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