KEGG   Mus caroli (Ryukyu mouse): 110299318
Entry
110299318         CDS       T05910                                 
Symbol
Tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X3
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
mcal  Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110299318 (Tnrc6a)
   03036 Chromosome and associated proteins [BR:mcal03036]
    110299318 (Tnrc6a)
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110299318 (Tnrc6a)
Chromosome and associated proteins [BR:mcal03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    110299318 (Tnrc6a)
SSDB
Motif
Pfam: TNRC6-PABC_bdg Ago_hook RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 110299318
NCBI-ProteinID: XP_021024653
Ensembl: MGP_CAROLIEiJ_G0030425
UniProt: A0A6P5Q4J7
Position
7:125244029..125316427
AA seq 1893 aa
MRELEAKATKDVERNLSRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIK
PSVSQPQPASSDNGTSTATSTNNNAKRATASNQQPPPPQQQEQQQQQPQALPRYPREVPP
RFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSAVTNQQPQNNGEVQSSKSQSDI
NHNTSGSHYENCQRGPVSSTSDCSTSCKNAVNDLLEKEAWLSVPGSDPELAPECIDADSA
SNSESERNITVMASGNTGGEKDGLRNSTGLGSQSKFVVGSSSNNVGHGSSTGPWGFPHGA
LISTCQVSVDAPESKPESSNNRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLA
LKGPAGSGSSGINSQCSTIGQMPNNQSINSKVSGSSTHGTWGSLQETCEPEVSGTQKVSF
SGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQAPSVM
NGTSLSHLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGINGPM
GTNFQVSTNKGGGVWEPGTGNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTGLSSVEWNK
LPSNQHSNDSANGNGKKLTNGWKSTEEDDQGSATSQTNEQNSVWAKAGGTVESDGSAEST
GRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETS
PRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSS
CQGGWEDDSAATGMIKSNQWGNCKEDKSAWNDSQKSKQGWGDGQKSSQGWSIPAGDNWGE
SSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSKASSS
QGWGDPPKCSQSLGWGESSKPLSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIPAPA
KEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEGSGRSDQQAQM
HRLLPAASAVSSKETSSGSGWGEPWAEPSTPATTVDNGTSAWGKPIDSGPSWGEPITAAS
NASTWGSGSVGQQSLNKSGPKSMQDGWCGDDMPLPGSRPTGWEEEEDVEIGMWNSNSSQE
LNSSLNWPPYTKKMSSKGLSGKKRRRERGMMKGGNKQEDAWINPFVKQFSNISFSRDSPE
ENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRTVGKGPGSRPQISKESSMERNPYFDK
NGNPNMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGG
LNPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSVPSANRQQQDQQGRPLS
VQQQMMQQSRQLDPSLLVKQQTPPSQQPLHQPAMKSFLDNVMPHTTPELQKGPSPVNAFS
NFPIGLNSNLNVNMDMNSIKEPQSRLRKWTTVDSMSVNTSLDQNSSKHGAISSGFRLEES
PFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETD
PYVTPGSVINSLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVPLSSTA
QSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTWDN
SPLRVGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLIT
FHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPS
PGWQSLGSSQSRLGSLDCSHSFSSRTDVNHWNGAGLSGANCGDLHGTSLWGTPHYSTSLW
GPPSSSDPRGISSPSPINAFLSVDHLGGGGESM
NT seq 5682 nt   +upstreamnt  +downstreamnt
atgagagaattggaagctaaagctaccaaagacgtagagagaaatcttagcagggattta
gtgcaagaagaagaacagttgatggaagaaaagaaaaagaaaaaagacgacaagaaaaag
aaggaagctgctcaaaagaaggccactgaacaaaaaatcaaagtgccagaacagataaag
cccagtgtaagccagcctcagcctgccagctctgataacggcacttccacagcaaccagc
actaataataatgccaagcgagctacagccagcaatcagcagccgccgccgccgcagcag
caagagcagcagcagcagcagccacaagccttgcctcggtatccacgtgaagtacctcca
cgatttcgccaccaggaacacaaacagcttctgaagaggggtcagcatttccctgtcata
gcagcaaacttgggatctgctgttaaggtgttaaacagccaatcagaaagcagtgctgta
acaaatcaacagccacaaaataacggagaggtgcagagcagcaagagccagtcagatata
aatcataatacttcaggatcccattatgaaaattgccagcggggacctgtgtcttctaca
agtgactgtagcacaagctgtaagaatgctgtaaacgacttgttggaaaaagaagcatgg
ctctcagtccctggcagtgatcctgagttggctccagaatgtatagatgctgattctgcc
tccaattctgagtcagagagaaacatcactgtcatggcttcagggaacacaggtggtgag
aaagatggccttcggaatagcactggacttggttctcaaagcaaatttgtggttggtagc
agcagcaataatgtgggccatggaagtagtactggcccatggggctttccccatggagcc
ctaataagcacatgtcaggtctctgtggatgctcctgaaagcaaaccagaaagtagtaac
aataggatgaatgcttggggcactgtaagttcttcatcaaatggagggttaaatccaagc
actttgaattcagctagcaaccatggtgcctggccagtattagaaaacaatggactcgcc
ctaaaagggcctgcagggagtgggagttctggcatcaatagtcagtgtagtaccataggc
cagatgcctaacaatcagagtatcaactctaaagtcagtggctcttctacccatggtacc
tggggtagccttcaggaaacttgtgagcctgaagtaagtggtacacagaaggtttcattc
agtggtcaacctcagaatatcaccactgaaacgactggaccaaataacactactaacttt
atgacctctagtttaccaaactccggttcagtacaaaataatgaactgcctactagtaat
ccaggggcctggcgtgtgagcacaatgaatcatcctcagatacaggctccgtcagttatg
aatggcacttccctttctcaccttagtaatggagagtcaaaaactggaggctcctacggt
actacatggggtgcctatggttctaattactctggcgacaaatgtgcaggccctaatggc
caagccaatggtgacactgtgaatgcaactctaatgcagcctggcataaatgggcctatg
ggcactaactttcaagttagtacaaacaaagggggaggtgtgtgggagcctgggacaggg
aattcccagagttcaccatggggaagtggaaatggtgcaaattctggaggaagtcgaaga
ggatggggaagtcctgcacagaacactggcactggtctatccagtgtcgagtggaacaaa
ctgcctagcaaccagcattccaatgacagtgcaaatggcaatggtaagaagcttacaaat
ggatggaaatctactgaggaagacgatcagggttctgccacatctcagacgaatgagcaa
aacagtgtgtgggccaaagcaggaggcacagtggagagtgatggtagtgcagagagcact
ggacgccttgaagaaaaagtaaccggggaaagtcagagtagagatagaagaaaaattgat
cagcacacattactccaaagcattgtaaacagaactgacttagatccacgtgtcctatcc
aactctgggtggggacagactcctattaagcagaatactgcctgggatacagagacatca
ccaagaggggaaagaaagactgacaatgggacagaggcctggggaagctctgcaacacag
acttttaactcaggggcatgtacagataagactagccctaatagtaacgatacctcatct
gtatcagggtggggtgatcccaaacctactctgaggtggggagattccaaaggctcaagc
tgccagggggggtgggaagatgactctgctgctacaggaatgatcaagagcaatcagtgg
gggaattgcaaagaagacaagtctgcatggaatgattcgcaaaagagcaaacaaggctgg
ggtgatggacaaaagtcaagccaaggttggtccattcctgccggtgataactggggagaa
tcttccaggagtaaccattggggtgaggccaataagaaatccagctcaggaggcagtgac
agtgacaggtccatttctggttggaacgaacttgggaaaactagttcttttacttgggga
aataatataaatccaaataactcatcaggatgggatgagtcttctaaagcgagctcttcc
cagggctggggagaccctccaaagtgcagtcagtctctaggctggggggagtcatcaaag
ccgcttagttctccagattggaacaagcaacaagacattgttggatcatggggaatccca
ccagccaccagcaagcctcctggtacaggctggcttggaggacctattcctgctccagca
aaggaggaagaacccacaggctgggaggagccatccccagaatctatacgaagaaaaatg
gagatcgatgatggaacttcagcttggggagatccaagcaaatacaactacaaaaatgtg
aacatgtggaataaaaacatcccggaaggcagcggccgctcagaccagcaagcacagatg
caccggctattgccagctgcaagtgccgtctcaagcaaggagaccagcagtggctctggc
tggggtgagccttgggcagagccttctactccagccacaactgtggataatggtacttca
gcctggggcaagcccatagacagtggtcccagctggggagaacccattactgcagcatcc
aatgcatccacgtggggctccggctctgttggtcaacaatcattaaacaaatctgggccc
aaatctatgcaagatggctggtgtggcgatgacatgccattgcctggaagtcgacccact
ggctgggaagaggaggaggatgtagagataggaatgtggaacagtaactcatctcaagag
cttaactcatctttaaattggccgccatataccaagaaaatgtcatcaaagggtctgagt
ggcaaaaaaaggagaagggaaaggggaatgatgaaaggcggaaacaaacaagaggatgca
tggataaatccattcgttaaacagttttcaaatatcagtttttcgagagactcaccagaa
gaaaatgtacagagcaataagatggatctttctggaggaatgttacaagacaagcggatg
gagattgataaacatagcctgaatattggtgattacaatcgaacggtcgggaaaggccct
gggtctcggcctcagatttccaaagagtcttccatggagcgcaatccttattttgataag
aatggcaatcccaatatgtttggtgttggaaacacagcagcacaaccccggggcatgcag
cagcctccagcacaacctctcagttcatctcagcctaatcttcgtgctcaagtgcctcct
ccattactctcccctcaggttccagtttcattgctgaagtatgcaccaaacaacggtggc
ctgaatccgctctttggccctcaacaggtagccatgctgaaccagctatcccaactaaac
cagctttctcagatctcccagttacagcgattgttagcgcagcagcagagggcacagagt
cagagaagcgtgccttctgctaaccgacagcagcaagaccagcagggtcgacctcttagt
gtgcagcagcagatgatgcaacagtctcgtcaacttgatccaagcctgctggtgaagcag
cagactccgccttctcagcagccgctccatcagccagccatgaagtccttccttgacaat
gtcatgccccacactacacccgagctgcagaaagggccatcgccagtaaatgctttcagc
aactttcctataggcttgaactcaaacttgaatgtaaatatggatatgaacagtattaaa
gagccacagtcacgactaaggaagtggacaacagtggacagcatgtctgtgaacacgtcg
ttggatcaaaactccagcaaacatggtgctatttcaagtggttttaggctggaagagtct
ccatttgttccctatgactttatgaatagcagtacttcaccagccagtcctccaggttca
ataggagatggctggccacgtgccaaatcgcctaacggctctagcagtgttaactggcca
ccagaatttcgccctggtgaaccatggaaaggttatccaaacattgaccctgaaactgac
ccttacgtcactcctggcagtgtcataaacagtctttcaattaatactgtgcgggaagtt
gaccacctcagggacaggaacagtgggtcatcctcatccttgaacaccacgctgccttca
actagtgcctggtcatccattcgtgcctccaactacaatgttcccctcagcagtacagca
caaagcacttcagccagaaatagtgattccaaattgacgtggtctcctggttcagttaca
aacacctctctggctcatgagctgtggaaagtccctttgccacctaaaaacatcactgct
ccgtcccgcccacctccagggctgactggtcagaagccacccttgtctacgtgggataat
tctccccttcgtgtaggtggaggatggggaaattctgacgccagatataccccaggctcc
agctggggtgagagcagctcagggagaataaccaattggcttgttctgaagaacctcaca
cctcagattgacggctcaactctgcgcaccctgtgcatgcagcatggcccactgattaca
ttccatctgaacctcccacatggaaatgctctggtccgttacagttcaaaagaagaggta
gtgaaggcacaaaagtctctgcacatgtgtgtgctggggaacactactattctcgctgag
tttgccagtgaagaggagatcagtcgcttctttgcacaaagtcagtctctgaccccttct
cctggctggcagtctctcgggtccagccagagccggctgggctctctcgactgttcccac
tcgttctccagccggactgatgtcaatcactggaatggtgctgggctgtcgggagctaac
tgtggagaccttcacggcacttccctctgggggaccccacattattccacaagcctgtgg
ggtcccccgagcagcagcgacccccggggaattagcagcccatcccccattaatgctttt
ctttctgttgaccacctgggtgggggtggggagtccatgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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