KEGG   Mus caroli (Ryukyu mouse): 110302417
Entry
110302417         CDS       T05910                                 
Symbol
Xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03008  Ribosome biogenesis in eukaryotes
mcal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    110302417 (Xrn1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110302417 (Xrn1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110302417 (Xrn1)
   03009 Ribosome biogenesis [BR:mcal03009]
    110302417 (Xrn1)
   03016 Transfer RNA biogenesis [BR:mcal03016]
    110302417 (Xrn1)
   03036 Chromosome and associated proteins [BR:mcal03036]
    110302417 (Xrn1)
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110302417 (Xrn1)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     110302417 (Xrn1)
Ribosome biogenesis [BR:mcal03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    110302417 (Xrn1)
Transfer RNA biogenesis [BR:mcal03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    110302417 (Xrn1)
Chromosome and associated proteins [BR:mcal03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    110302417 (Xrn1)
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 SH3_12 XRN1_D1 Dicer_dimer Ppx_C
Other DBs
NCBI-GeneID: 110302417
NCBI-ProteinID: XP_029337845
Ensembl: MGP_CAROLIEiJ_G0032535
UniProt: A0A6P7RRM8
Position
9:91557597..91662798
AA seq 1665 aa
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYIAILPELGGYINESGHLNLHRFERYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGAAAEEAKNCKEKRKPKGQENSLGWAALDKSEGEGVASRDNFEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDEFLANQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDRDTEFTYSSPWPEKFPAIERCCTRKVESETVSEFHCSSLSIENIASAVLGKSVFVN
WPHLEEARVVAVSDGETKFYIEEPPGTQKVYLGKTAPPSKVIQLTDKEQSNWTKEIQGIS
EQYLRRKGIIINETSAVVYAQLLTGRKYQIGQNGEVRLEKQWSKQILPFLYQTIVKDIRA
FDSRFSNIKTLDDLFPPRSMVFMLGTPYYGCTGEVQESGDVITEGRIRVVFSIPCEPNLD
ALIQNQHKYSIKYNPGYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLK
FNKKNEEVPGYTKKVGNEWMYSSAAEQLLAEYIERAPELFSYIAKNSQEDVFYEDDIWPG
ENENGAEKVQEIITWLKGHPVSTLSRSSCDLHILDAAIVEKIEEEVEKCKQRKSNKKVRV
TVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVXVRESFSVPVGLRGTVIGIKGASREADV
LFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRCETGNQKLTAIVKPQPSVSHC
SAAPSGHLGGLNHSPQSLFLPTQVPTKGDDEFCNIWQSLQGAGKIQHLQPAVQEKGAVLP
QEISQVPEAHKSGFTDHSVRHQQRKHDSQRKFKEEYKSPQAECQSQKLSSKQTCGGSARC
DIKLLKRNESPGASGTRKAVTSYPSAVHKPPSGIENFLASLNXSKESEAQLPQHGEPPDE
ADLSPQSFAMKGTRMLKEILKIDSPDTRDSKNDMKKSDNEATVSSRRDERGMSSHPKLSK
KLTCHMNKPHGTNEFQNVASVDSVCWPGQMPPVSTPVTELSRICSLVGMPQPDFSFLRTT
QTMTVCQVKLSNGLLVHGPQCHSESEAKERAALFALQQLGSLGVSFPLPPPIFTNYPPAV
PPGAVPPVFTQPTANIMPSSSHLFGSVSWRPPVPVAGNAFHYPSYPGAMPLAGGVPGGVH
SQFIPLQVTKKRVANRKNFENKEAQSSQATPLQTNKPGSSEATKMTPQESPPASSSSSQA
AQPVSPHVETASQGHVGSQLRSAPSSSRRKSRKLAVNFSVSKPSE
NT seq 4998 nt   +upstreamnt  +downstreamnt
atgggagtccccaagttttaccgatggatctcggagcggtacccctgcctcagcgaagtg
gtgaaggagcatcagattccagaatttgataacttgtacctggatatgaatgggattata
catcagtgttcccatcctaatgatgatgatgtgcacttcagaatttcagatgacaaaatc
tttactgacatttttcactacttggaggtgttgtttcgaattattaaacccaggaaagtg
ttctttatggctgttgacggtgtggctcctcgagcaaaaatgaaccagcaacgtgggagg
cgttttaggtcagccaaggaggcagaagacaaaattaaaaaagcaatagaaaagggagaa
acacttcctacagaagccagattcgattccaactgtattacgccagggactgaattcatg
gccagattgcatgaacatctgaagtattttgtaaatatgaaaatttccacagacaaatca
tggcaaggtgttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggcttagatgctgacttgatcatgcttggattaacaagtcacgaggcacat
ttttctctcttaagagaagaagttaggtttggtggaaaaaaaacacaaagggtatgtgca
ccagaagaaacgacatttcacctcctacacttgtctttaatgagagagtatattgattat
gaattttcagcattaaaggaaaagatcacatttaaatatgatattgaaaaaattatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattgctatcctgccagaa
cttggaggttatattaatgaaagtggacatctcaacttacatcgatttgagagatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctcaagtgg
tttgaaagcaaagttggtaacaaatatctcaatgaggcagcaggtgcggcagcagaagag
gcaaagaactgcaaggagaagagaaaaccgaagggtcaggaaaattctttaggttgggct
gcattagacaaaagtgaaggtgaaggagtagcttctagagataactttgaagatgagact
gaagatgatgatctgtttgaaactgaatttagacaatataaaagaacatactacatgacg
aagatgggggtcgacgtagtatctgatgagtttctggctaatcaggctgcctgttatgtt
caggctatacagtggatcttacactattactatcatggagtgcagtcctggagctggtac
tatccctatcattatgcacccttcctatctgatatccgcaatatcagtacactcaaaatc
cattttgaactagggaaacccttcaagccattcgagcagctgcttgctgtacttccatcg
gctagtaaaaatttgcttcctacatgctaccagcatttgatgacnagtgaagactctcca
attatagaatattatccacctgattttaaaactgatctaaatgggaaacaacaggaatgg
gaagctgtggtattaataccatttattgatgagacacgattattggaagccatggagaca
tgtaaccactccctcaaaaaagaagagaggaaaagaaaccaacacagtgagtgcctaatg
tgctggtacgatagagacacagagttcacctactcctctccatggccagaaaagttccct
gccatagaacgatgttgtacaaggaaagtagaaagtgaaacagtgtctgagtttcattgc
agttcattgagtatagagaacatagcttcggcggtgctgggaaagtcagtctttgttaac
tggcctcatcttgaagaagctagagttgtggcagtatcagatggtgaaactaagttttac
atagaagaacctccaggaacacagaaggtttatttggggaaaactgccccaccatctaaa
gtcatccaacttacagataaagaacaatcgaactggactaaagaaatacaaggaatttca
gaacaatacctaagaagaaagggaataataataaatgaaacatctgctgttgtgtatgct
cagttgctcacgggtcgtaaatatcaaatcggtcagaatggtgaagtccgtctagaaaaa
cagtggtcaaaacagattcttcctttcctttatcaaactattgttaaggacatccgagct
tttgactctcgtttctccaatatcaaaacattggatgacttgtttccaccgagaagtatg
gtctttatgcttggaactccttattatggctgcactggagaagttcaggagtcaggagat
gtgattacagaagggagaatccgtgtggttttcagcattccttgtgaaccaaatcttgat
gctttaatacagaatcagcataaatactctataaagtacaacccaggatatgtgttggcc
ggtcgccttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattgga
agaggatctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaa
ttcaacaagaaaaatgaggaagtccctggctataccaagaaagtggggaacgagtggatg
tactcatcggcagcagagcagctcctcgcagagtacatcgagagagcaccagaactgttt
agttacatagcaaaaaacagccaagaggatgtattctatgaagatgacatctggcctgga
gaaaatgagaacggggctgagaaagttcaagaaattattacttggctaaaagggcatcct
gtcagtactctgtctcggtcttcttgtgacttacacattctggatgcagccattgttgaa
aaaatcgaggaagaagttgagaagtgcaagcaaagaaagagcaacaagaaagtccgagtg
acagtgaagccccatttgctgtacagacccttagagcagcagcatggagtcattcctgat
cgggatgccgagttccggctctttgatcgcgttgtgaangtgagagagagcttctccgtg
ccagtcggccttcgaggcaccgtcattggaattaaaggggctagcagagaagctgatgta
ctatttgaagtattatttgatgaggaatttcctggaggcttaacaataaggtgctcacct
ggtaggggataccgactgccaacaagtgccttggtgaacctttctcatgggagtcggtgt
gaaactggaaaccagaagttgacagccattgtgaaaccacagccgtctgtgagtcactgt
agtgcagctccntccgggcacttgggaggcctcaaccactctcctcagtcgctttttctt
cctactcaggtacctacaaaaggtgatgatgaattttgcaacatttggcaatctctacag
ggagctggaaaaattcaacacttgcagccggcagtacaagagaagggtgcagttctacct
caagaaataagtcaagtacctgaagctcataaatcaggctttactgaccacagtgtcaga
catcagcaaagaaaacacgactctcaacgaaaatttaaggaagaatataaaagtcctcaa
gctgagtgtcagagtcagaagttgtccagtaaacagacttgtggagggtctgccagatgt
gatattaaactattgaagagaaatgaaagtccaggagcgtcaggaacccggaaggctgta
actagttacccgagtgcagtgcacaagcctccctctggaattgagaactttttagcatct
ttgaatntctctaaggagagtgaagcacagttacctcagcatggagagcctccagacgag
gcggatttgtccccgcagtcctttgctatgaaaggaacacggatgcttaaagaaatcctg
aaaattgatagccctgacacaagagacagcaagaatgatatgaagaaatctgataatgaa
gccactgtttcttctagaagagacgagcgtggaatgtcatcacatcctaagctaagtaag
aagctgacatgccatatgaacaagcctcatgggactaatgagttccaaaatgtggcatcg
gtngacagtgtgtgttggccaggccagatgcctcctgtgtccacaccagtaactgaactt
tctcgaatttgttcccttgttggaatgccacaacctgatttctcctttctgcgaacaaca
cagacaatgacagtttgtcaggtaaaattgtctaatggcttactggtacatgggccacag
tgccactctgaaagtgaagccaaggagagagctgctctttttgctttacagcaactgggc
tccttgggtgtgagttttcctttgcctccacccatatttacaaattatcctcctgcggtg
ccacctggagccgtccctcctgtttttacccaacctactgctaatataatgccttcatcg
tctcatctctttggctcagtgtcatggagaccaccagtgccagttgctgggaatgccttc
cactatccttcatatcctggagccatgcccttggctggaggagtgccaggcggagtgcac
agtcagttcatacctctgcaggttaccaaaaaaagagttgcaaacagaaagaattttgag
aataaggaggcccagagttctcaggccacaccacttcagactaacaagccagggtcttct
gaagccaccaaaatgactccacaagaaagtccaccagcctcttcatcgtcctctcaggct
gcccagcccgtgtctcctcatgttgaaactgcctcccaaggccatgttgggtcccaactg
aggtcagcgccaagctcctcaagaaggaagtcgagaaaactggccgtcaacttcagcgtt
tctaaaccttcggaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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