KEGG   Mus caroli (Ryukyu mouse): 110302889
Entry
110302889         CDS       T05910                                 
Name
(RefSeq) putative ATP-dependent RNA helicase Pl10
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal04622  RIG-I-like receptor signaling pathway
mcal05161  Hepatitis B
mcal05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    110302889
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    110302889
  09172 Infectious disease: viral
   05161 Hepatitis B
    110302889
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110302889
   03041 Spliceosome [BR:mcal03041]
    110302889
   03036 Chromosome and associated proteins [BR:mcal03036]
    110302889
Enzymes [BR:mcal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     110302889
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110302889
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110302889
Spliceosome [BR:mcal03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    110302889
Chromosome and associated proteins [BR:mcal03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    110302889
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-GeneID: 110302889
NCBI-ProteinID: XP_021029345
Ensembl: MGP_CAROLIEiJ_G0015028
UniProt: A0A6P5QG21
Position
1:176818911..176822706
AA seq 660 aa
MSHVAEEDELGLDQQLAGLDLTSPDSQSGGSTASKGRYIPPHLRNREAAKASYDKDGSRW
SKDKDAYSSFGSRSDTRAKSSFFSDRGGSGSRGRFDDRGRSDYEGVGSRGGRSGFGKFER
GGNSRWCDKADEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIES
FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ
IYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY
GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI
RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVW
VEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE
EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA
TSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDY
RQSSGASSSSFSSGRASNNRSGGGSHGSSRGFGGGSYGGFYNSDGYGGNYSSQGVDWWGN
NT seq 1983 nt   +upstreamnt  +downstreamnt
atgagtcatgtggcagaggaagatgagctcgggctggaccagcagttggctggcctagac
ctgacgtctccggacagccagagcgggggcagcacagccagcaaagggcgctacatcccc
cctcacctgcggaaccgggaggccgccaaggcgtcctacgacaaagacggctcacggtgg
agtaaagacaaggatgcctacagcagcttcgggtcccgcagcgacacgagagccaagtcc
agtttcttcagtgaccgcggcggaagcggctccaggggaaggtttgacgaccgcgggcgg
agtgactacgagggcgttggcagccggggaggtagaagtggctttggcaaatttgagcgg
ggcgggaacagtcgctggtgtgacaaagcagacgaggatgactggtcgaaaccgctccca
ccaagcgaacgcttggaacaggaactcttttccggaggcaacactgggattaactttgag
aaatatgatgacatcccggttgaggcgacagggaataactgccctccacatattgaaagt
ttcagcgatgtcgagatgggagagattattatgggaaacatcgagctcactcgttacaca
cgcccaactcctgtgcaaaagcatgctattcctattatcaaggagaaaagagacttgatg
gcttgtgcccaaacagggtctggaaaaacagcagcttttcttctacctatcttgagtcag
atctatacggatggtccaggtgaagctttgagggccatgaaggagaatggaaagtatggg
cgtcgcaaacagtatccaatctccttggtcttggctccgaccagagaattggccgtgcag
atctatgaggaggccaggaaattctcataccgctctcgagttcgtccttgtgtggtttat
ggtggagctgatattgggcagcagattcgagacttggaacgtggctgtcacttgttagta
gctactccaggacggctagtagatatgatggagagaggaaagattggactggacttctgc
aaatacttggtgttagatgaagcggatcggatgttggacatgggctttgagcctcagata
cgaagaatagttgagcaagacaccatgcctccaaaaggtgtccgccacactatgatgttt
agtgctacctttcctaaggaaatacagatgctggctcgggatttcttggatgaatatatc
tttctggccgtaggaagagttgggtctacttctgagaacatcacacagaaagtcgtgtgg
gtggaagaagcagacaagcggtcatttctgcttgacctcctgaatgcaacgggcaaggat
tccctgatattggtgtttgtggagaccaaaaagggtgcagattctctggaggatttctta
taccacgaaggatatgcttgtaccagtatccatggagaccgatctcagcgagatagggaa
gaggcccttcaccaattccgatcaggaaaaagtccaattctagtggctacagcagtagct
gcaagaggactggatatttccaatgtgaaacatgtcatcaatttcgacttgcctagtgac
atcgaagaatatgtgcatcgcattggccgtacaggtcgtgttggaaaccttggccttgcc
acctcattcttcaacgagaggaacataaatattaccaaagatttattggatcttcttgtt
gaagcaaaacaagaagtgccatcttggctagaaaacatggcttttgaacaccattacaag
ggtggcagtcgtggacggtccaagagcagatttagtggaggatttggtgctagagactat
cgacaaagtagcggtgccagcagttccagcttcagcagtggccgtgctagcaacaatcgc
agcggtggaggcagccatggcagcagcagagggtttggtggaggtagctatggaggcttt
tacaacagtgatggatatggaggaaattatagctcccagggggttgactggtggggtaac
tga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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