KEGG   Mus caroli (Ryukyu mouse): 110305549
Entry
110305549         CDS       T05910                                 
Symbol
Top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03440  Homologous recombination
mcal03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    110305549 (Top3a)
   03460 Fanconi anemia pathway
    110305549 (Top3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mcal03032]
    110305549 (Top3a)
   03400 DNA repair and recombination proteins [BR:mcal03400]
    110305549 (Top3a)
Enzymes [BR:mcal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     110305549 (Top3a)
DNA replication proteins [BR:mcal03032]
 Eukaryotic type
  DNA Topoisomerases
   110305549 (Top3a)
DNA repair and recombination proteins [BR:mcal03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     110305549 (Top3a)
   FA (Fanconi anemia) pathway
     110305549 (Top3a)
SSDB
Motif
Pfam: Topoisom_bac zf-GRF Toprim zf-C4_Topoisom zf-C2H2_10
Other DBs
NCBI-GeneID: 110305549
NCBI-ProteinID: XP_021033225
Ensembl: MGP_CAROLIEiJ_G0016462
UniProt: A0A6P5QQB2
Position
11:complement(55565805..55600749)
AA seq 1003 aa
MIFPVTLLAFQWQRRPGGRALSRAAMEVAFRGVRKVLCVAEKNDAAKGIADLLSNGRMRR
KEGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEK
YCPENFIDIKKTLERETHHCQALVIWTDCDREGENIGFEIIHVCKAVKPNLRVLRARFSE
ITPHAVRTACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLIS
YGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVTHDHKDGTVEFNWKRYRLFNHTACLVLY
QLCMEDPMATVVEVRSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYI
SYPRTETNIFPKDLNLVALVEQQTVDPHWGAFAQTILERGGPTPRNGSKSDQAHPPIHPT
KYTSGLQGDDRRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDV
YPYDHWSDKLLPVYEQGSHFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAE
HIETIKARMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKK
DKFQVLRQQVQKYKQVFIEAVAKAKKLDEALSQYLGERTEVAQQEEIYPAMPEPVRKCPQ
CNKDMVLKTKKSGGFYLSCMGFPECRSAVWFPDSVLEASRDNSVCSACQPPPVYRLKLKF
KRGSLPPTMPLEFVGCIGGCDETLKEIFGLRFPRALPRASQPSGHLQASQALNRMDSSQH
NLSQPLVNRHTGPSKTVAQTLLPPTTAGESNSVTCNCGREAVLLTVRKQGPNQGRHFYKC
SSGDCNFFLWADSSHSTGGGTPTSASGPPGSSVGCPSSVGSHMDGFGNLGSDSDGGTSCL
CGQPAVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENVAPGSFAAPAWPGGRGKAQ
RPEAASKRPRAGSSDAGSTVKKPRKCSICHQPGHTRSFCPQNR
NT seq 3012 nt   +upstreamnt  +downstreamnt
atgatcttcccggtcaccctcttagcgtttcagtggcagcgacggcctggaggccgtgcc
ctgtcccgcgctgccatggaagtggccttccgaggagtgcgaaaagttctctgcgtggcg
gagaaaaacgacgctgccaaggggatcgccgacttgctgtccaacgggcgtatgaggcgg
aaagaaggcctttctaaattcaacaagatttatgaatttgactatcatctgtatggccag
aatgttacaatggtaatgacttcagtctctggacatttgctggctcatgacttccagatg
cagtttcggaaatggcagagctgcaatccccttgtcctctttgaagcagaaattgaaaag
tattgcccagaaaattttatagatatcaagaaaactctagaacgagagacacatcattgt
caggccctggtgatctggacggactgtgacagggaaggtgagaacatcggttttgagatt
atccacgtatgcaaggctgtaaaacccaatctacgggtgctgagagcccgcttctctgag
atcacgccacacgccgtcagaacagcctgtgaaaacctaactgagcctgaccagagagtg
agtgacgcagtggacgtgaggcaagagctggacctgaggatcggagctgccttcacaagg
ttccagaccctgcggctccagaggatcttccctgaggtgctggcagagcagctcatcagc
tacggcagttgccagttcccaacactggggtttgtggtggagaggttcaaggccattcag
gcttttgtgccagaagtcttccacaaaattaaagtaactcatgaccacaaagatgggacc
gtagagttcaactggaaacgataccgtctctttaaccacacagcttgtcttgtcctttat
cagttgtgcatggaggatcccatggcgactgtggtagaggtcagatctaagccaaagagc
aagtggaggccgcaggctttggacacggtggagctagagaaactggcatctcggaaattg
agaataaatgccaaagaaaccatgaggattgcggaaaagctctatacacaagggtacatc
agctacccccggacagaaacaaacatcttccccaaagacttaaacctggttgcattggta
gaacagcagaccgtggatccacactggggggcttttgctcagaccattctagagcgaggt
ggccccactccacgaaatgggagcaagtctgatcaagctcaccctcccattcaccccacc
aaatacaccagcggtttgcagggagatgatcggcgactgtatgagttcattgttcgccat
ttcctggcttgctgctctcaggacgctcaggggcaagagactacagtagagatcgacatt
gcccaagagcgctttgtggcccacgggctcatcattctggcccgtaactacctagatgtg
tatccgtatgatcactggagtgacaagctcctccccgtctatgagcaaggctcccacttc
cagcccagcactgtggaaatggtggatggggagactagcccaccccaactgcttaccgaa
gccgacctcatcgccctcatggagaaacatgggatcggtactgatgcaactcatgcagaa
cacatagagaccatcaaagcccggatgtatgtgggactcacctcagacaagcggttcctg
cctgggcacctgggcatggggcttgtagaaggttacgattccatgggttatgagatgtcc
aagcctgacctccgtgctgagctggaagcggatctcaagctgatctgtgagggcaagaag
gataagtttcaagttctaaggcagcaagtgcaaaaatacaagcaggttttcattgaagca
gtggcgaaggcaaagaagttggatgaggctttatctcagtacttaggagaaaggacagag
gtggcccagcaagaagagatctacccagccatgccagagcctgttcggaagtgcccacag
tgtaacaaggatatggtcctcaagaccaagaagagtggtgggttctaccttagctgcatg
ggcttcccagaatgtcggtcagctgtgtggtttcctgactcggtgctggaggccagcagg
gacaacagcgtgtgttctgcttgtcagccaccccctgtgtacaggttgaagttgaagttt
aagcgtggtagccttcccccaactatgcccctggagtttgtcggctgcataggtggatgt
gatgagactttgaaggaaatcttcggcctgcgatttccacgggctctcccaagagctagc
cagccctctggccacctgcaggccagccaggccctcaacaggatggacagcagtcagcat
aacctgtctcaacctctggttaatagacatactggaccttcaaagacagtggcccaaacc
ttgctaccacccactactgctggtgaaagcaactctgtgacctgcaattgtggccgggag
gctgtgctgctcactgtccgcaagcagggccccaaccagggccggcatttctacaagtgc
agtagtggtgactgcaacttcttcctgtgggctgacagcagccattccactggaggaggg
acccccacctctgcatcaggacccccaggcagctctgtaggatgcccatccagcgtaggc
agccacatggatgggtttggcaaccttggcagtgacagtgatggaggtacatcctgcctg
tgcgggcagcctgctgtcacacggactgtacagaaggatggacccaacaaaggacgccag
ttccacacctgtgccaagccacgagagcaacagtgtggcttctttcagtgggtggatgag
aacgtggccccagggagttttgcagcccctgcatggccaggaggcagaggaaaagcccag
agaccagaggctgcaagcaaaagaccaagagctggttcctcagatgcagggtccacagta
aaaaagcctcggaaatgtagcatttgtcaccagcctggacacacccggtccttttgtcct
cagaacagatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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