KEGG   Mus caroli (Ryukyu mouse): 110307411
Entry
110307411         CDS       T05910                                 
Symbol
Atg2b
Name
(RefSeq) autophagy-related protein 2 homolog B
  KO
K17906  autophagy-related protein 2
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal04136  Autophagy - other
mcal04140  Autophagy - animal
mcal05010  Alzheimer disease
mcal05014  Amyotrophic lateral sclerosis
mcal05016  Huntington disease
mcal05017  Spinocerebellar ataxia
mcal05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    110307411 (Atg2b)
   04136 Autophagy - other
    110307411 (Atg2b)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    110307411 (Atg2b)
   05014 Amyotrophic lateral sclerosis
    110307411 (Atg2b)
   05016 Huntington disease
    110307411 (Atg2b)
   05017 Spinocerebellar ataxia
    110307411 (Atg2b)
   05022 Pathways of neurodegeneration - multiple diseases
    110307411 (Atg2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mcal04131]
    110307411 (Atg2b)
   03029 Mitochondrial biogenesis [BR:mcal03029]
    110307411 (Atg2b)
Membrane trafficking [BR:mcal04131]
 Autophagy
  Autophagosome formation proteins
   Atg18-Atg2 complex
    110307411 (Atg2b)
Mitochondrial biogenesis [BR:mcal03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    110307411 (Atg2b)
SSDB
Motif
Pfam: ATG2-VPS13_C Chorein_N ATG2_CAD VPS13_DH-like
Other DBs
NCBI-GeneID: 110307411
NCBI-ProteinID: XP_021035312
Ensembl: MGP_CAROLIEiJ_G0018090
UniProt: A0A6P5QN72
Position
12:complement(100091879..100156413)
AA seq 2076 aa
MPWPFSESIKKRACRYLLQRYLGHFLQEKLSLEQLSLDLYQGTGSLAQVPLDKWCLNEIL
ESADAPLEVTEGFIQSISLSVPWGSLLQDNCALEVRGLEMVFRPRPRVATGSEPMYWSSF
MTSSMQLAKECLSQKLTDEQGEASQPFEGLEKFAETIETVLRRVKVTFIDTVLRIEHVPE
NSKTGAALEIRVDRTVYCDETADESSGVNVHQPTAFAHKLLQLSGVSLFWDEFSASAKSS
PVCSTAPVETEPKLSPSWNPKIVYEPHPQLTRTLPEIAPSDPVQIGRLLGRLELSLTLKQ
NEVLPGAKLDVDGQIDSFHLFLSPRQVHLLLDMLAAIAGPENSSKIGLANKDRKNRPMQQ
EDEYRIQMELNRYYLRKDSLSMGVSSEKSFYETETARTPSSREEEVFFSMADMDMSHSLS
SLPPLGDPPHMDLELSLTSTYTNTPAGSPLSATVLQPTWGEFADHKEQPVRGPAFQSDVV
HPASLQKAALSSRSVSVDESRPEFICRLALGIFSVSVLHIDPLSPAETSLNVNPLTRMAI
DFFSCIEKMDPAIFSTGDFKSFRAVFAEACSHDHLRFIGTGIKVSYEQRQRSASRHFSTD
MSVGQMEFLECLFPTDCHSVPPHYTELLTFHSKEGTDAHLPVCLQLHYKHSETRGPQGNQ
ARLSSVPQKAELHIKLNPVCCELDISIVDRLNSLLQPQKLTTVEMMASHMYASYNKHISL
HKAFTEVFLDDSHSPANRRVSVQVATPALHLSVRFPIPDLRSDQERGPWFKKSLQKETLH
LEFTDLESKTEFVGGSTPEQTKLELTFRELSGSFQEEKGGPSVKFFHVSGGVDGDTASSD
DFDWPRMVLKINPPAMHSILERIAAEEEEENDGHYQEEEDGGAHSLKDVCDLRRPAPSPF
SSRRVMFENEQMVMPGDPVEMTEFQDKAISNSHYVLELLLPNIHLTLPSKGFYEKLYNRI
FNDLLLWEPTAPSPVETLENVSYGIGLSVASQLINTFSKDSFSPFKSAVHYDEDSGSEEE
TLQYFSAVDPNYRSRRKKKSDSQNKNSQSFLSVLLSVNHGLMAVLTDVKQENGDPMESKH
GEFWLEFNSGSFFCVTKYEGFEDKHYICLHSSSLRLYHKGMVDGAILPTETRLPCSTRPH
WLEPTIYSSEEDGLSRAASDGVGGDNLNMLSVAVKILSDKSESNTKEFLVAVGLKGATLQ
HRVLPAGLSWHEQILNFLNIADEPVLGYNPPTSFTTFHVHLWSCALDYRPLHLPIRSLLT
VETFSISSSVALDKSSSTLRIIMDEAALHLSDKCNTVTVNLNRDYVRVMDMGLLELTITA
VKSDSDGEQTAPRFELHCSSDVVHIRTCSDSCAALMNLIQYVASYGDLHVPQKAEMKPGV
PQRKPKVDSSARSSSHGPVLPEADQQILRDLMSDAMEEVDLQQASVPVGAQANGVLDEKS
HTQEPCCSDLFLFPDESGNVSQESSPAYPSLTHHLISDGVTGVTAENDDFCILFAPKAAV
QEKEEEPVIKIMVDDAIVIKDDYFSLPITRTDSSKAPLHFPIPAIRYVVKEVSLVWHLYG
GKDFATAPPTSPAKSYISPHSSPSQTPTRHGRHTVCGGKGRNHDFLMEIQLSKVKFQHEV
YPPCKPECESSLLEHPVSRQVFIVQDLEIRDRLATSQMNKFLYLYCSKDMPRKAHSNMLT
IKALHVRPESGRSPQECCLRVSLMPLRLNIDQDALFFLKDFFTSLSTEVELLLTPDPEVT
KSPGADVTCSLPRHLSTSKEPNLVVSFPGPKQASPNHRANSAEGGNGLEEDVSAEETSFS
DQPVFFREFRFTAEVPIRLDYHGKHVSMDQGTLAGILIGLAQLNCSELKLKRLFYRHGLL
GIDKLFSYAISEWLSDIKKNQLPGILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIV
RGFQRGAASFGTSTAMAALELTNRMVQTIQAAAETAYDMVSPSTLSIEPKKAKRFPHHRL
AHQPVDLREGVAKAYSVVKEGITDTAQTIYETAAREHESRGVTGAVGEVLRQIPPAVVRP
LIVATEATSNVLGGMRNQIRPDVRQDESQKWRHGED
NT seq 6231 nt   +upstreamnt  +downstreamnt
atgccttggccattttcagaatccatcaagaagagggcctgtcgctacctcctacagagg
tacctgggccacttcctgcaggagaagctgagcctggagcagctgagcctggacctgtac
cagggcaccgggtcccttgcccaggtccccttggacaaatggtgtctcaatgaaatcctg
gagtcagcagatgcaccgttagaagtcacggaaggatttattcagtctatttccctgtcc
gtcccatggggctccttgctgcaggacaactgtgccctggaagtgagaggactggagatg
gtcttccggcctcgacctcgagtagcaactgggtccgagcctatgtactggtcaagcttc
atgaccagcagtatgcagctggcaaaggagtgtcttagccagaaactgacagatgagcaa
ggagaggcatcgcagcctttcgagggactggaaaagtttgcagaaaccatcgaaacagta
ctaagaagagtgaaagtcacttttatagatactgttttaagaattgaacatgtgccagaa
aattctaaaactggagctgcacttgaaatccgagtagacaggaccgtgtactgtgacgaa
acagccgacgagtcctcaggagtcaatgtgcatcagcccacagcttttgctcataaattg
ctgcagctctctggggtgtctctgttctgggatgaattttctgcttcagcaaaatcttcc
cccgtgtgttcaactgcaccagtggaaactgagccaaagctgtcacctagctggaacccc
aaaattgtttatgagccacacccacaactaactagaacgttaccggagatagcaccctcg
gatccagtgcagattggaaggctactgggcaggctggaattgagtctcactttaaaacag
aatgaagtgcttccaggagccaagttggatgtcgatggacagatagactcctttcatcta
ttcctgtcaccgaggcaggtacacctccttctggatatgttagcagctattgctggacca
gaaaattctagcaaaatagggctggctaataaagacaggaaaaatcgacccatgcagcag
gaagatgagtaccgaattcagatggaattaaaccggtattatctgaggaaagattccctc
tctatgggtgtgtcttcagagaagagcttctatgagacagaaacagctcgtacaccttct
agccgtgaggaagaagttttcttctccatggccgacatggacatgtctcacagtctgtcc
tctcttccaccccttggggacccaccacacatggacctggagctgtccctgacgagtaca
tacaccaacacacctgcggggtccccgctaagcgccactgtgcttcagccaacttgggga
gagtttgccgaccacaaagagcagccagtcagagggccagcgttccagtctgacgtggtc
cacccggcatctttacaaaaggctgctctctcctctaggtctgtttcagtggatgaatcc
agacctgagtttatctgcaggttggctctcggcatattctccgtctctgtgcttcacatc
gatcctttgtctccagcggaaacatctctgaacgtcaacccattgacacgcatggccatc
gatttcttctcctgtatagaaaagatggacccagcaatattttcgacgggagactttaag
tctttccgagcagtctttgccgaagcttgttcacacgatcaccttagatttataggtact
ggcatcaaagtgtcctatgagcagagacaaagatcagcttcccggcactttagcaccgac
atgtccgttgggcaaatggagtttttggagtgtctgtttccaacagattgtcattctgtc
cctcctcactacaccgagcttctaacgttccattccaaagaagggacggatgcccacctt
cccgtttgtcttcagcttcactataaacactctgagactagaggaccccagggtaatcaa
gcaagacttagttcagttcctcaaaaggcagaattacacattaaattaaaccccgtgtgt
tgcgagctggatatcagtattgtggataggttaaattccttgcttcaaccccagaaactc
actaccgtggagatgatggcctcgcacatgtatgcgtcctataacaagcatattagtttg
cacaaggctttcacggaagtgttcctagatgactcgcacagtcctgcaaaccgtcgggtg
tccgtgcaagttgccaccccagccctgcacctgtctgttcgattccctattcctgatctc
cgatcagaccaggaaagaggaccctggtttaagaagtcacttcagaaggagacccttcat
ttagaatttacggatctggagtccaagacagagttcgtgggaggatccaccccagaacaa
actaaactggagctgacttttcgagagctgtctgggtcgtttcaggaagagaagggaggg
ccatctgtcaagttcttccatgtgtctggtggagtagatggagacaccgcatcgtcagat
gactttgactggccacgaatggtactgaaaataaacccaccagccatgcattccattttg
gagagaatagcagccgaggaagaggaagagaatgatggtcactaccaggaggaggaggac
ggaggggctcattccctgaaagatgtctgtgacctgaggcggccagccccgtctcccttt
tcctctcgtcgagtgatgtttgagaatgagcagatggtgatgccgggagaccctgtggag
atgacggagtttcaggacaaagccatcagcaactcgcactacgtgctggagctcctgctg
cccaacatccacctgacgctgcccagcaaaggcttctatgagaagctctataacaggatc
tttaatgacttgcttctctgggagccaacagctccttcaccagtggagacacttgaaaac
gtttcctatggcatcggactctccgtggccagtcagctgatcaacaccttcagcaaagat
agcttcagtccctttaaatctgcagttcattatgatgaagacagtggatctgaagaagag
actttgcagtatttttctgctgttgatcccaactatcgttcccgtaggaaaaaaaagtcg
gactctcagaacaagaactctcagagcttcctctcagtgcttctgagtgtcaatcatgga
ctaatggcagtgctcactgatgtaaagcaagagaatggagatccaatggaaagtaagcat
ggtgaattctggttagaattcaatagcggctcgttcttctgcgtgacaaagtatgagggc
tttgaggacaagcactacatctgcttgcattccagcagcctcaggctgtaccacaaaggc
atggtagatggagccattctccctacagagacgcgcttgccctgttccacccgcccacac
tggctggaacctacaatttattcctctgaagaagatggcctcagccgagctgcctcagat
ggggttgggggagacaatttgaatatgctttcagtcgcagtgaagatactgtctgataag
tccgagtccaacacgaaggagttcctcgtggctgtggggctgaaaggagccactctacaa
cacagggtgctgcctgccggactcagttggcacgagcagattttaaacttcttaaatatt
gctgatgaacctgttttgggatataaccctccaacttcattcacaactttccacgtccat
ctttggagctgtgcacttgattacaggccccttcacctgccaatccgatcccttcttact
gttgagacgttcagcatttctagcagtgttgctttggataaatcttcctccactctcaga
atcatcatggacgaggctgctttacacctgtcagacaagtgcaacactgtcactgtaaac
ctgaatagagattatgttcgtgtgatggacatgggacttttagagctgaccataaccgca
gtaaaatctgattctgatggagaacagactgctccccgctttgagttgcactgttccagc
gatgtcgtgcatatcagaacatgctcagactcgtgcgctgcgctgatgaatctcattcag
tatgtcgcaagttacggggacctacatgtacctcagaaagcagagatgaagcctggagtc
ccacagagaaagcccaaggtagattccagcgctcggtcatcttcacatggtccagtgctt
cctgaagcagatcagcagattttacgggacctgatgagtgacgccatggaggaggttgat
ctgcagcaggcctctgtccccgtcggagcacaggctaatggtgtcctggatgaaaagtct
cacactcaggagccgtgctgctcagacctcttcctgttcccagatgagagtggaaatgtg
tcccaggagtccagccctgcctatccgtcgctcactcaccacttgatcagtgatggggtg
accggtgtgaccgctgaaaacgatgacttctgtattctttttgcaccaaaagcagccgtt
caggagaaggaagaagagccagtgataaagatcatggttgatgacgccattgtgatcaaa
gatgactatttcagtctgcccatcacgaggacggacagcagcaaagcgccgctccacttt
cccattcctgccatccgatatgttgttaaagaggtctctctggtgtggcatctttatgga
ggcaaggactttgcaacagctcctccaacttctccagctaagagttacattagtccccac
agctcaccttctcaaacacctacaaggcacgggcgccacacagtctgtgggggcaaagga
aggaaccatgacttcttgatggaaatacagttaagcaaggtgaagtttcagcatgaggtc
taccctccgtgtaagcctgagtgtgaatccagcctcttagaacacccagtctccaggcag
gtcttcatcgtgcaggaccttgaaattcgagatcggctggcaacatcacagatgaataag
tttttatacctgtattgcagcaaagacatgcctcgtaaagcccattccaacatgctgaca
attaaagcgttgcacgtacgtccggagtctggcaggtcaccacaggaatgctgcttgaga
gtgtccctgatgcctcttcgcctcaatattgaccaggacgccttgttcttcctcaaggat
ttcttcacaagtctttctacagaagtggagcttctactgactccagatccagaagttaca
aagtctcctggagctgatgtcacctgcagtttgccaaggcatttgagtacctcaaaggag
ccaaatctagttgtttcttttcctgggccaaaacaagcttccccgaaccatcgtgccaat
tcagcggagggcggtaatggactggaggaggacgtctctgctgaggaaacttcatttagt
gaccagcctgtgttttttagagaatttagattcacggcagaagttcccatccggcttgac
taccacggcaagcacgtgtcgatggatcagggtacattggctgggattttgattggcctg
gcccagctgaactgttcggagctaaagctgaaaaggcttttctatcggcatggtttgcta
ggtattgacaaattgttctcatatgcaatctcggaatggctcagtgacattaagaagaac
cagctaccaggaatcctgggaggtgttggccctatgcattcactagttcaactagtgcaa
ggcctgaaggacttggtgtggctgcccattgagcaataccggaaggatggccgaatcgtc
aggggcttccagagaggcgctgcttcctttggtacctcaactgcaatggctgccctagaa
ctcacaaacagaatggtccaaaccatacaggcagctgcagagactgcatatgacatggtg
tctccgagtaccctttccattgagcccaagaaggcaaagagatttcctcatcaccgatta
gcccaccagccagtagacctgagggaaggcgtggccaaggcctacagcgttgtaaaagag
ggaatcacagacacagctcagaccatctatgaaacggcggctcgagaacacgagagcaga
ggggtcactggtgctgtgggtgaagttctgcggcagatcccaccggcagtggtcagaccc
ctgattgtagccaccgaggcgacatcaaatgtgttaggtggcatgagaaaccaaattaga
ccagacgttcggcaggacgagtcacagaaatggcgccatggggaggactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (7)   
   KEGG PATHWAY (7)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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