KEGG   Mus caroli (Ryukyu mouse): 110312362
Entry
110312362         CDS       T05910                                 
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03013  Nucleocytoplasmic transport
mcal03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110312362 (Upf2)
   03015 mRNA surveillance pathway
    110312362 (Upf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110312362 (Upf2)
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     110312362 (Upf2)
   mRNA cycle factors
    P-body specific factors
     110312362 (Upf2)
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 110312362
NCBI-ProteinID: XP_021041563
Ensembl: MGP_CAROLIEiJ_G0023157
UniProt: A0A6P5R9B1
Position
2:2749765..2855376
AA seq 1269 aa
MPAERKKSASMEEKESLLNNKEKDCSERRPVSSKEKPRDDLKVTAKKEVSKVPEDKKKRL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKQEEEERKKQEEQAKRQQEEAAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKSIINADRES
HTHVSVVISFCRHCGDDIAGLVPRRVKSAAEKFSLSFPPSEIVSAERQQPFQHLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSQNKDSNKDDSKEAKEPKDNKEASSPDDLELELENLEINDDTLELEGADEAED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRK
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIET
KNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKD
LSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKESKES
MTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDDDDEGEEEEEENTDYLTDSN
KENETDEENAEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIP
LHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQ
AEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADL
IFKTGGRRR
NT seq 3810 nt   +upstreamnt  +downstreamnt
atgccagctgagcgtaaaaagtcagcaagtatggaagaaaaagaatctttattaaacaac
aaggaaaaagactgcagtgagaggcgcccagtgagcagcaaggagaaaccaagggacgac
ctcaaggtcactgccaagaaggaggtcagtaaggtcccagaagacaaaaagaagagactg
gaagaagataagagaaaaaaggaagacaaggaacgcaagaaaaaagaggaagagaaggtg
aaggcagaggaagagttaaagaagaaggaagaggaagaaaagaagaaacaggaagaggaa
gagaggaagaagcaggaggagcaggccaagcggcagcaggaggaagcggctgctcagctg
aaagagaaagaagaatctcttcagcttcatcaggaggcttgggaacgccatcaattacga
aaggaactgcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaacttcttt
agccgcctagattcaagcttaaagaaaaataccgcttttgtcaagaaactcaaaacaatt
acggaacaacagagagactccttgtctcatgattttaatggcctgaatttaagcaaatac
attgcagaagccgtagcttccattgtggaagcaaaattaaagatctctgatgtgaactgt
gccgtgcacctctgctctctctttcaccagcggtacgctgactttgcaccctcacttctt
caggtgtggaaaaaacattttgaagcaaggaaagaggagaagacgcctaacattaccaag
ctaagaactgacttgcgtttcattgcagagttgacaatagtggggattttcactgacaag
gaaggcctttccttgatctatgaacagctaaaaagtattatcaatgctgaccgagagtcc
cacactcatgtctccgtggtgatcagcttctgtcgccattgtggagatgacattgctgga
ctcgtaccgaggagagtcaagagtgctgcagagaagtttagtttgagcttccctcccagt
gagatcgttagtgcagagaggcagcagcctttccagcaccttctgaaagagtactttacg
tctttgaccaagcacctgaaaagggaccacagggagctgcagaacactgagaggcaaaac
aggcgcattctgcactccaaaggcgagctaagtgaggacaggcacaagcaatatgaggag
tttgccatgtcgtaccagaagctgctggcgaactctcagtccttagcggaccttttggat
gaaaatatgcccgatcttcctcaggacaaacccacaccagaagagcatgggcccggaatt
gacatatttacacccggcaaacctggagaatatgacttagaaggtggcatttgggaagat
gaagacgctcggaatttttatgaaaacctcatcgatttgaaagcatttgttccagccatc
ttgttcaaagacaatgaaaaaagtcagaacaaagattctaacaaagatgattccaaagag
gcaaaagaaccaaaggataataaggaggcatcaagtcctgatgatttggaacttgagttg
gagaatttagaaattaatgatgatacactggagttagaaggtgcagatgaagctgaagat
cttacaaagaaacttcttgatgagcaagaacaagaagatgaagaagccagcactggatct
catctcaaactcatagtagatgctttcctccagcagcttcccaactgtgtcaaccgagac
ctaatcgacaaggcagccatggatttttgcatgaacatgaacacaaaggcaaacaggaag
aagttggtgcgggcgctcttcatcgtccctaggcagaggttggatttgctaccattttat
gcaagattggttgctaccttgcatccctgcatgtctgatgtagcagaggatctttgttcc
atgctgaggggggatttcagatttcatgttcgaaaaaaggaccagatcaacattgaaaca
aagaacaaaactgtccgctttattggagagctaaccaagtttaagatgttcaccaaaaat
gatacactgcattgtttaaagatgcttctatcagacttttctcatcatcatattgaaatg
gcatgtactctactggagacctgcggaagatttctcttcagatctccagaatcacacctg
aggaccagtgtgcttttggagcaaatgatgagaaagaaacaagcaatgcatcttgatgca
cggtatgttacaatggtagaaaatgcatattattactgcaacccaccgcctgctgaaaag
acagtgagaaagaaacgtcctcctcttcaggagtatgtccgaaaacttttgtacaaggat
ctctctaaggtcactacggaaaaggttttgagacagatgcgaaagttgccctggcaggac
caagaagtaaaagactatgtcatttgttgtatgataaacatctggaacgtgaaatacaac
agtattcactgtgtagccaacctcctagcagggctggtactctaccaggaggatgttggg
atccacgttgtggatggagtactcgaagatattcgattgggaatggaggttaatcaaccg
aaatttaaccagaggcgtatcagtagtgccaagttcttaggagaactttataattacaga
atggtcgaatcagctgttattttcagaactctttattcttttacttcatttggtgtcaac
cctgatgggtctccaagttccctggaccctcctgagcatctctttagaattagactagta
tgtactattttggatacctgtggccagtactttgacagaggttccagtaaacgaaaactt
gactgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtttgg
acaaaagaccatccatttcctattgatatagattacatgatcagtgacacactagagctg
ctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacaagac
ttggaacgagaattcttaataaaactaggcctagtaaatgacaaagagtccaaagagtct
atgacagaaggggaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaaaca
gaggaacagtctggaaatgaaagtgaagtgaacgagccagaagaagaagagggttctgat
gatgatgatgagggagaggaggaggaagaggagaatacagattacctcacagattccaac
aaggagaacgagactgatgaagaaaatgctgaggtgatgattaagggaggtggactgaag
catgttccttgtgtagaagatgaggacttcattcaagctctggacaaaatgatgctagaa
aaccttcagcagcgaagtggtgagtctgttaaagtgcaccagcttgatgtggctatccct
ttgcatctcaaaagccagctgaggaaagggcccccacttggtgggggggaaggagagaca
gagtctgcagacacgatgccatttgtcatgctaacaagaaaaggcaataaacagcagttt
aagattctcaatgtgcccatgtcatcccaacttgctgcaaatcattggaaccagcaacaa
gcagaacaagaggagaggatgaggatgaaaaagctcaccttagacatcaatgaacgacaa
gagcaagaagattatcaagaaatgttgcagtctcttgcccagcgcccagctccagcaaac
actaatcgtgagcggcggcctcgttaccagcatccaaagggagcacctaatgcagatcta
atctttaagactggtgggaggagacgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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