KEGG   Mus caroli (Ryukyu mouse): 110312714
Entry
110312714         CDS       T05910                                 
Name
(RefSeq) class II histocompatibility antigen, M alpha chain
  KO
K06752  MHC class II antigen
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal04145  Phagosome
mcal04514  Cell adhesion molecules
mcal04612  Antigen processing and presentation
mcal04640  Hematopoietic cell lineage
mcal04658  Th1 and Th2 cell differentiation
mcal04659  Th17 cell differentiation
mcal04672  Intestinal immune network for IgA production
mcal04940  Type I diabetes mellitus
mcal05140  Leishmaniasis
mcal05145  Toxoplasmosis
mcal05150  Staphylococcus aureus infection
mcal05152  Tuberculosis
mcal05164  Influenza A
mcal05166  Human T-cell leukemia virus 1 infection
mcal05168  Herpes simplex virus 1 infection
mcal05169  Epstein-Barr virus infection
mcal05310  Asthma
mcal05320  Autoimmune thyroid disease
mcal05321  Inflammatory bowel disease
mcal05322  Systemic lupus erythematosus
mcal05323  Rheumatoid arthritis
mcal05330  Allograft rejection
mcal05332  Graft-versus-host disease
mcal05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    110312714
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    110312714
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    110312714
   04612 Antigen processing and presentation
    110312714
   04658 Th1 and Th2 cell differentiation
    110312714
   04659 Th17 cell differentiation
    110312714
   04672 Intestinal immune network for IgA production
    110312714
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    110312714
   05164 Influenza A
    110312714
   05168 Herpes simplex virus 1 infection
    110312714
   05169 Epstein-Barr virus infection
    110312714
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    110312714
   05152 Tuberculosis
    110312714
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    110312714
   05140 Leishmaniasis
    110312714
  09163 Immune disease
   05310 Asthma
    110312714
   05322 Systemic lupus erythematosus
    110312714
   05323 Rheumatoid arthritis
    110312714
   05320 Autoimmune thyroid disease
    110312714
   05321 Inflammatory bowel disease
    110312714
   05330 Allograft rejection
    110312714
   05332 Graft-versus-host disease
    110312714
  09166 Cardiovascular disease
   05416 Viral myocarditis
    110312714
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    110312714
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mcal04147]
    110312714
Exosome [BR:mcal04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   110312714
  Exosomal proteins of epithelial cells
   110312714
  Exosomal proteins of breast milk
   110312714
SSDB
Motif
Pfam: MHC_II_alpha C1-set
Other DBs
NCBI-GeneID: 110312714
NCBI-ProteinID: XP_021042216
Ensembl: MGP_CAROLIEiJ_G0021443
UniProt: A0A6P5RGF4
Position
17:30456904..30470471
AA seq 261 aa
MEHEQKSGAVLLRLLRLLWLLPHSWAVLEASTPVLWDGPQNHTFRHTLFCQDGIPNIGLS
ETYDEDELFSFDFSQNTRVPRLPDFAEWAQGQGDASAIAFDKSFCEMLMREVSPQLEGQI
PVSRGLPVAEVFTLKPLEFGKPNTLVCFISNLFPPTLTVNWQLHSAPVEGASPTSISAVD
GLTFQAFSYLNFTPEPFDLYSCTVTHEIDRYTAIAYWVPQNALPSDLLENALCGVAFGLG
VLGTIMGIVFFLCSQRPCSGD
NT seq 786 nt   +upstreamnt  +downstreamnt
atggagcatgagcagaagtcaggagctgtgctgctgaggctgctgcgccttctgtggctg
ctgccccactcctgggcggtgctcgaagcgtctaccccagtgttgtgggatggcccacag
aaccacacattccggcacactctgttctgccaggacgggattcccaacatagggctctcg
gagacctatgacgaggacgaactcttctccttcgacttctcccagaacaccagagtgccc
cgactgcctgactttgctgagtgggctcagggtcagggagatgcctctgccattgcattt
gacaaaagcttctgtgagatgttgatgcgggaagtgagcccgcagcttgaaggtcaaatc
ccagtgtccagaggtttgcctgtggcggaggtattcacactgaagcccctggagtttggc
aagcccaacacattggtctgtttcatcagcaacctctttccaccgaccctgaccgtgaac
tggcagcttcactcggcccctgtggagggagctagccccacgtccatctcagccgtcgat
gggctgaccttccaggctttctcttatttaaatttcacaccagaaccctttgacctttac
tcctgcacggtgacgcacgagattgaccgctacacggcaattgcctattgggtaccccag
aacgccctgccttcggatctcctagagaatgcactgtgtggtgtggcctttggcctcggt
gtgctaggcaccatcatgggtattgtcttcttcctctgctcccagagaccgtgctcaggt
gactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (24)   
   KEGG PATHWAY (24)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (36)   

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