KEGG   Moraxella catarrhalis 25239: MC25239_00181
Entry
MC25239_00181     CDS       T03381                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
mcat  Moraxella catarrhalis 25239
Brite
KEGG Orthology (KO) [BR:mcat00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mcat03009]
    MC25239_00181 (rlmD)
Enzymes [BR:mcat01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     MC25239_00181 (rlmD)
Ribosome biogenesis [BR:mcat03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    MC25239_00181 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 PCMT Methyltransf_25 MTS Ubie_methyltran Methyltr_RsmB-F Methyltransf_23 TRAM Methyltransf_11 Met_10 FtsJ N6_Mtase Cons_hypoth95 CMAS Methyltransf_32 Methyltransf_12 GCD14 zf-Mss51 RrnaAD
Other DBs
NCBI-ProteinID: AIT42637
Position
complement(217218..218711)
AA seq 497 aa
MTQTHSLIQNPSKKGKPTARARKRLADTPPLEFRITNLAHDGRGVAVYETDNTTHNPDKA
GKKVFISFALPGEAVLVKMTNSKKNFEEGDALQVVNHPHSQRQTPPCPHFGVCGGCSLQH
WQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKKDSALVG
FRERASNFLAELNECHILDKRIGFELENLKALITDLNARDSIPQLEIAMGQTLPHVPDSI
KSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGADSVHRIDTEDARPTSLTVPPT
GGLFYHLPNFELTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSL
VLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFYAKDLTQDLSDQPWATGNNRF
DALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMF
SHTGHVESIARFERIDA
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgacccaaacgcattcacttattcaaaaccccagtaaaaaaggcaaaccaactgctcga
gcacgcaagcgtttggcagatacaccaccccttgaatttcgtatcacaaacttagcacac
gatgggcgtggcgtggcagtttatgagaccgataacaccacccacaatcctgataaagca
ggcaaaaaagtctttatcagctttgcattaccgggcgaggctgtcttggttaagatgacc
aattctaagaaaaattttgaagaaggtgatgccttacaagtcgtcaatcatccccattcc
cagcgtcaaacgccaccctgcccacattttggggtgtgtggcggatgtagtctacagcac
tggcaggcagatgctcaaattgatttcaaacagtccgtactaaaagagctgctcatacat
caagcaggcatcgagcctgatatttggcttaagcctttggttggcgatcgtcttggctat
cgcaccaaagcacgcatgggtgtacgctatgttgccaaaaaagactcggcactggtcggt
tttcgtgaacgcgccagcaactttttggcagaactcaatgaatgccatatcttagataaa
cgcatcggctttgagcttgaaaatttaaaagcactcatcaccgacctaaatgcacgagat
agcattccacagcttgagattgccatggggcagacactgccacatgtgcctgacagcatc
aaatcggttgcggttattgtgcgtcatatgcaggagcttgatgatgaagacttggctaag
ttgcgtcaattttttgcagctcgcaactggcaactgttcttacaaccaaaaggcgcagac
agcgtacatcgcatcgataccgaagatgctcgcccaacttcgctgactgtaccacccaca
ggtggtctgttttatcatctaccaaattttgagttgacttatgaattttcgccattggat
tttacgcaagttaatttatccgtcaatcaaaaaatgatggatttggcaagcagtctgtta
aacctacaaaaaggtgagcgtgtactggatttattttgcggattgggtaattttagctta
gtattggcaagacaagttggcgaaagtggctttgtggtcggtgttgaaggcagtgagcag
atgaccgaacgcgccaaaatgaatgcttgtgccaacggcattgcccatactgaattttat
gccaaagacttgacccaagatttaagcgatcagccatgggcaacgggcaataatcgcttt
gatgcactcttgattgacccaccccgctcaggtgcttgggaggtgatggcatacttgccc
aaatttaatgccaaacgcatcgtttatgtctcatgcaaccctgtcacactggctagagac
accaaagcactcatagaagctggctatcggctgacacatgctggtgtgatggatatgttt
agccatacaggtcatgttgagagcattgcacgatttgagcgtattgatgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (20)   
   Pfam (20)   
All databases (28)   

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