KEGG   Mycoplasma crocodyli: MCRO_0161
Entry
MCRO_0161         CDS       T01205                                 
Symbol
vacB
Name
(GenBank) VacB-like exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mcd  Mycoplasma crocodyli
Pathway
mcd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MCRO_0161 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcd03019]
    MCRO_0161 (vacB)
   03016 Transfer RNA biogenesis [BR:mcd03016]
    MCRO_0161 (vacB)
Enzymes [BR:mcd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     MCRO_0161 (vacB)
Messenger RNA biogenesis [BR:mcd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MCRO_0161 (vacB)
Transfer RNA biogenesis [BR:mcd03016]
 Prokaryotic type
  tRNA degradation factors
   MCRO_0161 (vacB)
SSDB
Motif
Pfam: RNB S1 CSD2 OB_RNB S1_2
Other DBs
NCBI-ProteinID: ADE19794
UniProt: D5E4Y9
Position
145767..147992
AA seq 741 aa
MNIKEELLKYLQSSNEVRSFLSIAKGLNIKPNKNKELTKVLQECQQNFLIFKNEKDEYFA
PVFKEEIEGNISISNNGKFAFVDYNINEELNTKNSVFIIKNNFNGAIHNDLVVVKIFEDI
TRNKEQRLFGVVSKIKQRMTNQLIGFVKQKGIYVDFEPIDKKFKFNKYKIVGMKQQANLN
DLVTVKIEEITKSFILVSIEKVITNDADTKLFIKAYLEGVNVPKIFPDSLESEVSLIPQN
IDNENKENREDFTNDLIVTIDGDDTKDFDDAINVVKLDNGNYLLSVHIADVSYYVREGSK
INEEALKRGTSIYLADKVIPMLPEALSNGICSLNPNEKRFVLSCIMEIDNSGKTVKTVIK
QGIIDSKYRLTYKQVNDFYDTQVIKNEWFSSNPNLNSKEFGVDNLSKMLNEAKELSLILH
KFKVNEGYIDFEIQEPKILFNEDGSVKDITFYPRGFSEELIEDFMVRANEEVAKYLSGHH
FPAMYRVHEKPDEERLLSFRNVLSTLGVKVVLPIGQITPLIYSGIIEKIKEQRNDEFIKM
LFLRTMQKAVYSGDNLGHFGLASQCYCHFTSPIRRYPDLVIHRILRELVLNKDISKKEEL
TNLVFSVSKANSASEQGAVEIERKVNDLLFSEYYKNKIGTVLKGQIVSVVKFGFFVEFEN
KTNALVHKSVLQDDTLEPNDTMTQLKGKNDTYTIGSYIDVVVAAVDLVDGKVDCVPQKFY
QDFLNQKINRRAVEDKHFRKN
NT seq 2226 nt   +upstreamnt  +downstreamnt
atgaatattaaagaagaattattaaaatatttacaatcatctaatgaagttaggtcattt
ttaagtattgcaaaaggtttaaatataaagccaaacaagaataaggagttgacaaaagtg
ttgcaggaatgccaacaaaactttttaatttttaagaatgaaaaagatgaatattttgct
cctgtttttaaggaagaaattgaaggtaatatttcaatatcaaacaatggaaaatttgct
tttgttgactacaacattaatgaagaattaaatacaaaaaattcggtttttataataaaa
aataatttcaatggagctatacacaatgatttagtagttgttaaaattttcgaagatatc
acaagaaataaagaacaaagactttttggagtagtttcaaaaattaaacaaagaatgaca
aatcaattgataggatttgtaaaacaaaaaggtatttatgttgattttgaaccgattgat
aaaaaatttaaatttaataaatacaaaattgtaggaatgaaacaacaagctaatttaaat
gatttagtaaccgttaaaatagaagaaattacaaaaagtttcatacttgtttctattgaa
aaagtaataacaaatgatgcagatacaaaattattcataaaagcttatcttgaaggagtt
aatgttcctaaaatatttcctgattctctcgaaagtgaagtttctttaatcccgcaaaat
attgataatgaaaacaaggaaaatcgagaagattttaccaatgacttaattgttacaata
gacggtgatgatacaaaagactttgacgatgctataaatgtagttaagttagataacggc
aattatttactttctgttcatattgctgatgtttcatactatgtaagagaaggttcaaaa
attaatgaagaagcacttaaaagaggaacaagtatttatcttgctgataaagtaattcca
atgctacctgaagctttgtcaaatggaatatgttcattaaaccctaatgaaaaaagattt
gtacttagttgcataatggaaatagataactcaggtaaaactgttaaaactgtaataaaa
caaggaattatcgatagtaaatatagacttacatataagcaggttaatgacttttacgac
acacaagttataaaaaatgaatgatttagttctaatccaaatctcaattcaaaagaattt
ggtgtagataatttatcgaaaatgctaaatgaagcaaaagaacttagtttaattcttcat
aaatttaaagtaaatgaagggtatattgattttgaaatacaagaaccaaaaattttattc
aatgaagacgggtcggttaaagatataacattttatccaagaggtttttctgaagaatta
attgaagattttatggttagagcaaatgaagaagttgcaaagtatttaagtgggcatcat
tttcctgcgatgtatagagttcatgaaaaaccagatgaagaaagattgttatcttttaga
aatgtacttagtacattaggagtaaaggtagttcttccaataggtcaaataactccttta
atttattcgggtataatagaaaaaattaaagaacaaagaaatgatgaatttataaaaatg
ctatttttaagaactatgcaaaaagctgtttattcaggagacaatttaggacactttggt
ttagcttctcaatgttattgtcattttacaagccctattagaagatatcctgatttagta
attcatagaattttaagagaacttgttcttaataaagatatatcaaaaaaagaagaatta
actaatctagtcttttcggtttctaaggctaattcagctagtgaacaaggagcggtagaa
atagaaagaaaagttaatgatttacttttttctgaatattataaaaataaaattggaact
gttttaaaaggtcaaattgttagtgttgttaagtttggtttctttgttgaatttgaaaat
aaaacaaatgcacttgttcataaaagtgttcttcaagatgatacacttgagcctaatgat
actatgacgcaactaaaaggaaaaaatgatacttacacaataggatcatatattgatgtt
gttgttgctgctgtagatcttgtagatggtaaagtagattgtgttcctcaaaagttttat
caagatttcttgaatcaaaaaatcaatagaagagcagttgaagataaacacttcagaaag
aattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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