KEGG   Methyloceanibacter caenitepidi: GL4_2315
Entry
GL4_2315          CDS       T03636                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mcg  Methyloceanibacter caenitepidi
Pathway
mcg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mcg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GL4_2315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcg03021]
    GL4_2315
   03400 DNA repair and recombination proteins [BR:mcg03400]
    GL4_2315
Enzymes [BR:mcg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GL4_2315
Transcription machinery [BR:mcg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GL4_2315
DNA repair and recombination proteins [BR:mcg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GL4_2315
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: BAQ17756
UniProt: A0A0A8K4M3
Position
complement(2392625..2396755)
AA seq 1376 aa
MAKTNGHKRYRKFFGHITEVAEMPNLIEVQKQSYDQFLMVDEPEGGREDEGLQSVFRSVF
PIKDFGERAQLEFVRYAFEAPKYDVDECQQRDMTFAAPLKVTLRLIVFDVNEETGARSVK
DIKEQDVYMGDMPLMTSNGTFVINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLFAAR
IIPYRGSWLDFEFDAKDIVYVRIDRRRKLPVTTLLYALGLDDEEILSTFYDRITLKAAKN
GWKMPFNAERMRGIKPTTDLIDAKTGKVAIEAGRKITARLAGKLSEEGLKELLVSDEDLY
GRYLAEDILNLESGEIYGEAGEEIDEKLLETLKELKLKEIPVLDIDHVNVGAFIRNTLAI
DKNSNTDEALLDIYRVMRPGEPPTPEAAQTLFNGIFFDAERYDLSSVGRVKMNMRLDLDA
PDTMRTLRKEDILAVIKTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMER
AIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSAL
GPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRR
VVKSKVTDEVVYLSAMEEARYVIAQANAELKDDGSFVEDLIVCRHAGDVELYPQDRVDLI
DVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLMAEAPLVGTGMESVVARDSG
AAISARRTGVVDQVDATRIVIRATEETDPSKSGVDIYNLRKFQRSNQNTCINQRPLVRVG
DAIQAGEIIADGPSTDLGELALGKNVLVAFMPWMGYNFEDSILISERVVRDDVFTSIHIE
EFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESP
MTPEEKLLRAIFGEKASDVRDTSLKLPPGVAGTVVEVRVFNRHGIEKDERAMAIEREEIE
RLAKDRDDEMAILDRNVFARLRDVLLHKVAAKGPKSVKKDAKITEAMLDEIPRSQWWEIA
LKNEKAMSEVEAIGRQYDDAKKRLEQRFVDKVDKLQRGDELPPGVMKMVKVFVAVKRKIQ
PGDKMAGRHGNKGVISQIVPVEDMPYLEDGQAVDIVLNPLGVPSRMNVGQILETHLGWAC
RGLGKKIGEALEEYHETNKTKPVKDLLKTIYGSDKAVAALSDDQMIEVGQDLTRGVPVAT
PVFDGAHEADVSDLLEVAGYDPSGQVTLYDGRSGEPFERKVTVGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGDDTFEAGIPESFNVLVKEMRALGLNVELVQPKPDEVQPHAMQLPKPAAE
NT seq 4131 nt   +upstreamnt  +downstreamnt
atggcgaaaacgaacggtcacaagcgatatcggaaattttttggccacatcaccgaagtg
gccgagatgccgaacctcatcgaggttcagaaacagtcctacgatcaattcctcatggtg
gacgagccggaaggcggtcgcgaggacgaggggctgcagtccgtatttcgttctgtgttt
ccgatcaaggacttcggcgagcgcgctcagcttgagttcgtgcgctatgcgttcgaagcg
cccaagtacgacgtggatgagtgccagcagcgcgacatgaccttcgcggcgccgctgaag
gtcaccttgcgtctcatcgtgtttgatgtgaacgaggagaccggcgcgcgctccgtcaag
gacatcaaggagcaggacgtctacatgggcgacatgccgctgatgacctcgaacggcacg
ttcgtgatcaacggcaccgagcgcgtgatcgtctcgcagatgcaccgttcgccgggtgtg
ttcttcgaccacgaccgcggcaagacccactcgtcgggcaagctgctgttcgccgcccgt
atcattccctatcgcgggtcctggctcgacttcgagttcgacgccaaggacatcgtctat
gtccgtatcgaccgccgccggaagctgccggtgacgacgctgctctatgcgctcggcctc
gacgacgaggaaattctctcgacgttctacgaccggatcacgctaaaggcggccaagaac
ggctggaagatgccgttcaatgcggaacgcatgcgcggcatcaagccgacgacggacctt
atcgacgccaagaccggcaaggttgctattgaagccggcaggaagatcacggcgcgcctg
gccgggaagctttccgaggaaggcctgaaagagctgctcgtcagcgatgaggacctctat
ggccggtacctggcagaggacatcctcaatctggaatcgggcgagatctacggcgaagcc
ggtgaggaaatcgacgagaagctgctggagaccctgaaggagctgaagcttaaggagatc
ccggttctcgacatcgaccacgtcaacgtgggcgcgttcatccgcaacacgctggcgatc
gacaagaattccaacacggacgaggcgctgctcgacatctaccgcgtcatgcgtccgggc
gagccgccgacgccggaagcagcgcagaccctgttcaacggtatcttcttcgatgccgag
cgctacgacctgtcgtccgtcggccgcgtgaagatgaatatgcgcctcgacctcgatgcg
ccggacaccatgcggacgctgcgcaaggaggacatccttgcggtcatcaagacgctggtc
ggtctacgcgacggcaagggcgaaatcgacgacatcgatcatctcggcaaccggcgcgtg
cgttcggtgggtgagctgatggagaaccagtaccgggtcggcttgctgcgcatggagcgg
gccatcaaggagcgcatgagctctgtcgacatcgatacggtgatgccgcaggacctcatc
aacgccaagccggccgcggccgcggtgcgcgaattcttcggctcctcgcagctgtcgcag
tttatggaccagaccaacccgctgtcggagattacccacaagcggcgcctgtcggcgctt
ggcccgggtggtctgacgcgcgagcgcgccggcttcgaggtgcgcgacgtgcacccgacg
cattacggccgcatctgcccgattgagacgccggaaggtccgaatatcggcctgatcaat
tcgctcgccacgttcgcgcgcgtgaacaagtacggcttcatcgagagcccgtaccggcgc
gtggtgaagagcaaggtgaccgacgaagtggtctatctctccgcaatggaagaggcgcgc
tacgtcatcgctcaggccaacgccgagctgaaggatgacggcagcttcgtcgaggacctc
atcgtctgccgtcacgctggcgatgtggagctgtatccgcaggatcgggtggacctcatc
gacgtgtcgcccaagcagcttgtatccgtcgccgcggcgctcattccgttcctcgaaaac
gacgacgccaaccgcgcgctgatgggttcgaacatgcagcgtcaggccgtgccgttgctc
atggcggaagctccgcttgtgggtacgggcatggaatccgtcgtggcgcgggattcgggc
gccgcgatcagcgcgcgccgcaccggcgtcgtcgatcaggtggacgccacccgtatcgtc
atccgcgcgacggaagagactgacccgtcgaagtcgggcgtcgacatctacaatctgcgc
aagttccagcgctcgaaccagaacacctgcatcaaccagcggccgctggtgcgtgtgggc
gacgccattcaggccggcgagatcatcgccgacgggccttcgaccgatcttggcgaactc
gcgctcggcaagaacgtgctcgtcgccttcatgccgtggatgggctacaacttcgaggac
tccatcctcatctccgagcgcgttgtgcgcgacgacgtcttcacctcgatccatatcgag
gagttcgaggtcatggcgcgcgacaccaagctcgggccggaggaaatcacgcgcgatatt
ccgaacgtctccgaagaggctctgaagaacctcgacgaggcgggcatcgtctatatcggc
gccgaggttcagccgggcgacatcctggtcggcaagatcacgccgaagggcgagagcccc
atgacgccggaagaaaagcttctgcgcgccatcttcggtgagaaggcgtcggacgttcgc
gacacctccctgaagctgccgccgggtgtggccggtacggtcgtcgaggtgcgggtgttc
aaccgccacggcatcgagaaagacgagcgcgccatggcgatcgagcgggaagagatcgag
cgtctcgccaaggaccgcgacgacgaaatggcgatcctggaccgcaacgtcttcgcgcgt
ctgcgcgacgtgctgctgcacaaggtggccgcgaagggtccgaagtcggtcaagaaggat
gccaagatcaccgaggccatgcttgatgagattccccgcagccagtggtgggagatcgcg
cttaagaacgagaaggccatgagcgaggtcgaggccatcggccggcagtacgacgacgcc
aagaagcggctcgagcagcgcttcgtggataaggtcgacaagctgcagcgcggcgacgag
ctgccgccgggcgtcatgaagatggtcaaggtcttcgtggccgtgaagcggaagatccag
ccgggcgacaagatggccggccgtcacggcaacaagggcgtgatctctcagatcgtgccg
gtcgaggacatgccttatctcgaggacggccaggcggtcgacatcgtgctgaacccgctc
ggcgtgccgagccgcatgaatgtcggtcaaatcctggagacccacctcggctgggcgtgc
cgcggtcttggcaagaagatcggcgaggcgctcgaggagtatcacgagaccaacaagacg
aagccggtcaaggatctgctcaagacgatctacggttctgacaaggctgttgcagccctc
tccgacgatcagatgatcgaagtggggcaggatctgacccgaggcgttcccgttgcgacg
ccggtattcgacggggcgcacgaagcggacgtttcggacctcttggaagtggcgggctac
gacccgtccggccaggtcacgttgtatgacggccgctccggcgagccgttcgagcgcaag
gtcacggtgggctacatctatatgctgaagctgcatcacctggtggacgacaagatccac
gcccgttcgatcggcccgtacagcctggtcacccagcagccgctgggcggtaaggcgcag
ttcggcggtcagcgcttcggtgaaatggaggtgtgggcgctcgaggcttatggcgccgcg
tacacgctccaggaaatgttgaccgtgaagtcggatgacgttgcgggccgcaccaaggtc
tacgaggcgatcgtccgtggcgacgacacgttcgaggccggcatccccgagtcgttcaac
gtgctggtcaaggaaatgcgtgcattgggactgaatgtcgaactggtgcagccgaagccg
gatgaggtgcagccgcatgccatgcagctgccgaagccggccgcggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (158)   
   KEGG ORTHOLOGY (1)   
   RefGene (155)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (172)   

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