KEGG   Momordica charantia (bitter melon): 111018188
Entry
111018188         CDS       T05045                                 
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    111018188
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mcha03400]
    111018188
Enzymes [BR:mcha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111018188
DNA repair and recombination proteins [BR:mcha03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     111018188
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase DNA_ligase_IV PRF
Other DBs
NCBI-GeneID: 111018188
NCBI-ProteinID: XP_022149862
UniProt: A0A6J1D959
Position
Unknown
AA seq 1257 aa
MTELINFNVLSTLFDWIQRSKSSAKKRSKFRKFLDTFCSSADYFSAIRLILPTLDRERGT
YGLKESVLATCLIDALGISRDSDDALRLNNWRKGGAKTGANAGNFALVAAEVLQRRQGMT
PGGLTIKELNDLLDRLALSENSRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRKRHKRQDIEVGKAVRPQLASRVSNANAAW
KKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGRGMSDVIVENIIATRCIL
DGEMLVWDKSLNRFAEFGSNQEIARAAKDGLDSDRQLCYVAFDVLYVGDTSVIHRSLKER
HELLRDVVKPVKGRLEILVPNGGLNSDCAGDPSWSQRAYNADDVERFFKNTIENRDEGIV
IKDMGSKWEPGDRSGKWLKLKPDYVRAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAERS
PSNAYPRRFISFCRVGTGLTDEDLDAVTNKLRPYFRKSEYPKKAAPSFYQVTNNSKERPD
VWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGNTQRGTDNSGWQDSNRKFIKSTGKRRKKSVSVVPSHLLQTDISGIKEDSLIFSNML
FYIVNVPPTHSLDSLHRLIVENGGTFSMNLNDSVTHSVAADTKAGIKYEAARRRGDVIHY
SWMLECCSQKKLLPLQPKHFLFLSDHSKKKLEEEIDAFSDSYFWDLELADLKQLLSNVSR
SEDVKAIDYYRGKYCPKDEWSIFVGFQIYFLPLRPSLKFDWDVLLELSMRRLKVEVSFRG
GKVSDNHVSATHVVVFCIPGSSVDCETVLKCFNEAEKHVILKNKIHIVAHQWLEDCLERA
HRLQEDAYSLKPNWKKSIEKLNSDIDSETPLASENTENQKISSPSNAYKDQGRNEAASGQ
HMLLHSTERSGGKKRGKSTARSMQKGKLSVEQVRRARARTAKGPAKISEVESDSSDYNDE
KTNAETENIGTPCSENLKTNELTKLENFDPSRKGKGIEHVPLCSTERTGEKKRGRRPTPT
ASARSMQKGKAGVEQGQRTRARTAKGSAKIGGVESDSSDTTDDKTNAEGNGVEKRNIGTV
CPANSNTNEFIWPENCDSSHKGKVIEQDDLAEFKSNVPEIEISTRYNCQGIEESEKLEVM
TDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPVQNNSEPTKKKVSYKDVASELLKDW
NT seq 3774 nt   +upstreamnt  +downstreamnt
atgacggagctcatcaacttcaatgttctatcaactctgttcgattggattcagcggagc
aaatcttccgccaagaagcgttccaagttccgcaagtttctcgacaccttctgcagttct
gccgactatttctccgccatccgcttgattctgcccaccctcgaccgggagcgcggcacc
tatggcctcaaggagtctgtactcgccacttgccttatcgacgctcttggcatctctaga
gactccgacgacgctcttcgtcttaacaattggcgcaaaggcggtgctaagactggagct
aatgccggcaatttcgctcttgttgctgccgaggttttgcagcgcaggcaaggaatgacc
cctggtggtctaacaattaaagagttaaatgatctgctggaccgtttggctttaagtgaa
aacagcagagcagaaaaaactgcagttctgtctactcttatacagaagacgaatgcacag
gaaatgaagtggattgtcatgataatcctcaaagatctgaaactgggagttagtgaaaag
agcatttttcatgagttccatccagatgcagaagacttattcaatgtcacctgtgactta
aaactggtttgtgaaaagctaagggatcgtagaaaaaggcataagcgtcaggacattgaa
gttggaaaagctgtgcgaccgcagctggcttcaagagtttccaatgcaaatgctgcatgg
aagaagcttcatgggaaggaagttgtagtcgaatgcaagtttgatggtgaccgtattcaa
attcataagaatggaactgaaatacacttcttttcaaggaactttctcgatcactcagaa
tatggacgtggaatgtctgatgttattgttgaaaatattattgccactaggtgtatactt
gatggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctcaaac
caagaaatagcaagggcagcaaaggatggattggacagcgatcgtcagttatgctatgtt
gcgttcgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaaaga
catgagcttctgagagatgtagtcaagcctgtgaagggacgattggaaattttagtacct
aatggtggtcttaatagtgactgtgctggggatccttcttggtcacaaagagcttataat
gccgatgatgtggaaagattttttaaaaataccattgaaaatagagatgaaggtattgtt
attaaggacatgggttccaagtgggaacctggtgatcgtagtgggaagtggttaaaatta
aagcctgattatgttcgtgctggatctgatttggatgccctcatcataggaggttactat
ggctctgggcgacggggtggggaggtagctcaatttctgatgggtcttgctgagcgttca
ccctcgaatgcatatcccagacgatttatttccttctgccgagtaggaactggacttact
gatgaggatttagatgctgttacaaacaaactgaggccttattttaggaaaagtgaatat
ccaaagaaggctgcaccgagcttttaccaagttacaaataattcaaaagaaagaccagat
gtttggattgaaagccctgagaaatcaatcattctttccattaccagtgatatacgaact
ataaagtctgaggtctttgcagcaccatatagcctaagatttccgcgcatagaccgtgtt
cgatatgacaaaccttggcatgaatgtcttgatgtgcaatcttttgtagagttggttcat
tcaagtaatggtaacacgcaaaggggcacagataatagtggctggcaagatagtaatcga
aagttcattaaatctactggaaagagaaggaagaagagcgtatctgttgttccttctcat
ttacttcagaccgatatttctggcattaaagaggactccttgattttctcaaatatgtta
ttttacattgttaatgtgcctccaacccattctctcgattccctgcacagattgattgtg
gagaatgggggtacattctctatgaatttgaacgattctgttacacactctgttgctgct
gacaccaaggcaggcatcaaatatgaggctgcaagacgtcgtggcgatgttattcattat
tcttggatgttggaatgttgttcccagaagaaactgctgcctctacagcctaagcatttt
ctctttctctctgaccattcaaagaaaaaattggaagaggaaattgatgcattttctgac
tcgtacttctgggatcttgaacttgcagacctgaaacagctattaagcaacgttagtaga
tcagaagatgtgaaagctattgactactacagggggaaatactgtccaaaagatgaatgg
agtatatttgttggtttccaaatttacttccttcctttaagaccatctttgaaatttgat
tgggatgttctgttggagctttcaatgaggagattgaaggttgaagtttcattcagaggt
ggaaaagtcagtgataaccatgtttctgctacccatgttgtagtcttctgtatacctgga
tcttccgtggattgtgaaacagtattgaaatgcttcaatgaagcggagaaacatgtcata
ttgaaaaataagattcatattgttgcacatcagtggttggaagactgtttggagagggcc
cacaggttacaagaagatgcatatagcttgaaacccaattggaaaaagtcaatcgaaaag
ttaaattctgacatagattctgagacaccattggcctcagaaaatacagaaaaccagaaa
atttcttctccttccaatgcatataaagatcaaggaagaaatgaagctgcttcaggacaa
cacatgctcttacattcaactgagagatctggtggcaagaaaagaggaaaatctactgca
aggagcatgcagaaagggaaattgagcgtcgaacaagttcgaagagctcgggcacgaaca
gccaaggggcctgcaaaaataagtgaagttgagtcagacagcagtgactataatgatgaa
aaaacaaatgcagagactgaaaatattggaacaccatgcagtgaaaacttgaaaacgaat
gagcttacaaagctggaaaactttgatccttcacgaaaaggcaagggcattgagcacgtg
cccttatgttcaaccgagagaactggtgagaagaaaagaggaagaagacctacacctact
gcaagtgcaaggagcatgcagaaagggaaagcaggcgttgaacaagggcaaagaactcgg
gcacgtacggccaaggggtctgcaaaaataggcggtgttgaatcagacagcagtgacact
actgatgataaaacaaatgcagaaggaaatggagtggagaaacgaaatattggaacagta
tgcccagcaaactcgaacacaaatgagtttatatggccagaaaattgtgattcctcacat
aaaggaaaggtcattgaacaagatgatcttgcagaatttaaatctaatgttccagaaatt
gaaatatctacaaggtacaattgccaaggcattgaagaatctgagaagctggaagtcatg
actgatccacttcaggccatgttattagatatggttcctagtcttggaatgagtgaaact
aaaagtagcagtactgttctcgaggagaagcagccagtgcaaaacaattctgagccaacg
aagaagaaagtgagctataaggacgttgccagtgaattgctcaaggattggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (40)   

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