KEGG   Momordica charantia (bitter melon): 111019037Help
Entry
111019037         CDS       T05045                                 

Definition
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111019037
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mcha03041]
    111019037
Enzymes [BR:mcha01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     111019037
Spliceosome [BR:mcha03041]
 Complex C
  Other components
   Step II factors
    111019037
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HA2 OB_NTP_bind Helicase_C DEAD AAA_22 AAA_30 AAA_19 T2SSE DUF2075 AAA_29 ATPase
Motif
Other DBs
NCBI-GeneID: 111019037
NCBI-ProteinID: XP_022151017
Position
Unknown
AA seq 700 aa AA seqDB search
MESKFSANGCKKRKRIEEQRKSLPIASVEKLLVQRVHSNDTLIIVGDTGSGKTTQIPQFL
FNAGFCRDGRAIGVTQPRRVAAVTVAKRVAEECGVELGQKVGYSIRFEDETSSSTRIKYM
TDGLLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQRARSRSLNDSVMSNTE
NMNVNSMMLENGNGGKNDSSFKRCQGRKLPPLKLIIMSASLDARLFSEYFGGARAVHVQG
RQYPVDIFYLYKPDPDYLEAILITIFQIHLEESPGDILTFLTGQEEIESMENLVKDKIQK
LPEGRRNLVTIPIYSALPSEQQLRVFAPAPPGIRKVILATNIAETSLTIPGIKYVIDPGL
VKARTYDPSKGMESLIIIPTSKEQALQRSGRAGREGPGKCFRLYPEITFDKLEDSTKPEI
KRCNLSNVILQLKALGVDDIIGFDFLEKPPRQAIIRSLEQLLLLRALTDDGKLSNPIGHQ
MARLPLDPMYSKALIVAGQFNCLEEMLITVSMLSVESIFYSPREKLEEARAKMKCFSSPE
GDHLTLINVYRSAEEFLSKKTLTFSKEKVEKSLRKWCKENFINSRSLRHARDVHSQIRGH
VEQMSLPLQSCGEDMLQFRRCLAASFFLNAATKQPDGTYRDCASGEAVQIHPSSVLFRKK
PDCVIFNEFIQTNHKYIRNLTRIDRLWLTELAPHCYALPN
NT seq 2103 nt NT seq  +upstreamnt  +downstreamnt
atggaaagcaagttctcagctaatggttgtaagaaaaggaaacgaattgaagaacagaga
aagtcgcttccaatagcttctgttgagaaacttctcgttcaaagggtgcatagtaacgat
acattgattattgttggtgatactggaagtggaaaaacgacacagataccgcagttcctg
tttaatgctggattttgtcgagatggaagagctattggggtgacacaacctcggcgtgtt
gctgctgtaactgtagccaaaagagttgctgaggaatgtggtgtcgagttgggccaaaag
gttggatattctatcagattcgaggatgaaacctctagttccacaagaatcaagtacatg
accgatggtctactactgagggaagcattgttggacccttatctttccagatactcagtt
atcattgttgatgaagctcacgagagaactgttaatactgatgtactgctaggatttttg
aaaaaagtccagagagcaagatctagatctctgaatgactctgttatgagtaacactgag
aacatgaatgttaatagcatgatgttagaaaatggaaatggtggtaaaaatgacagttcc
ttcaagcgatgtcaaggaaggaaactacccccattgaagttaattattatgtccgccagc
ttagatgcacgccttttctcagagtacttcggtggtgcgagggctgtccacgtccaaggg
cgtcaatatccagtagatatattttatctttataagcctgatccagattatttagaggcc
attcttattactatatttcagattcatctggaggagagtcccggtgatatacttacattt
ttgactgggcaagaagagatagaatctatggaaaatcttgtcaaggataagattcagaag
ttacctgaaggaagacgaaatttagtaactatccctatatattcagcacttccatcagag
cagcaactgcgagtttttgccccagctccacctggaattcgtaaggtaatattggcaaca
aatattgctgagacatccttgacaattcctggaatcaagtatgttattgatcctggattg
gtaaaagcacgcacctatgatccaagcaaaggaatggaatcattgattattattccaacc
tcgaaagagcaggcactacaaaggagtggacgtgcaggccgtgaaggacctggaaaatgc
tttcgtctgtatccagagattacgtttgataaacttgaggattcaacaaagccagagatt
aagagatgcaacctttccaatgtcattttgcaattgaaggctttaggcgttgatgatatc
ataggatttgatttcttagagaaaccaccaaggcaggctattatcaggtcattggagcaa
ttgcttctactgagggctttaacagatgacgggaaactatccaatccaataggacatcaa
atggctcgccttcctttagatccaatgtactccaaagctttgattgttgccggccagttc
aattgcttggaagaaatgttgataactgtgtcaatgctctctgtggaatccattttttac
agccctcgggagaagttagaagaggcaagagctaaaatgaaatgtttttcaagtccggaa
ggggatcacctcactctaatcaatgtatatcgatctgctgaagaatttctgagtaagaaa
acattgacattcagcaaagaaaaagttgagaaaagtttgagaaagtggtgcaaggaaaat
tttataaacagtcgatctttgagacacgcacgtgacgttcacagtcaaattagggggcat
gttgaacaaatgagtcttcctcttcagtcttgtggagaggacatgcttcagttccgcaga
tgtctggctgcttctttttttctcaatgcagcaacaaagcagcccgatggaacgtatagg
gattgtgcaagcggtgaggcagtacagattcacccttcttcagtgttatttcgcaaaaaa
ccagattgtgtaattttcaacgaattcattcaaactaatcataagtacatccgcaacctt
actagaatcgatcgactttggctgactgaactggctcctcattgttatgcgttgccgaat
taa

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