KEGG T06603: MCHIJ

Mycolicibacterium chitae: MCHIJ_18550

Entry

MCHIJ_18550       CDS       T06603

Symbol

topA

Name

(GenBank) DNA topoisomerase 1

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

mcht Mycolicibacterium chitae

Brite

KEGG Orthology (KO) [BR:mcht00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mcht03032]
    MCHIJ_18550 (topA)
   03400 DNA repair and recombination proteins [BR:mcht03400]
    MCHIJ_18550 (topA)
Enzymes [BR:mcht01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     MCHIJ_18550 (topA)
DNA replication proteins [BR:mcht03032]
Prokaryotic type
  DNA Topoisomerases
   MCHIJ_18550 (topA)
DNA repair and recombination proteins [BR:mcht03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      MCHIJ_18550 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Toprim_C_rpt Toprim Toprim_4

Other DBs

NCBI-ProteinID:

BBZ02418

Position

1911488..1914289

AA seq 933 aa
MADGNGSVRRLVIVESPTKARKIASYLGSNYIVESSRGHIRDLPRAAADVPAKYKSEPWA
RLGVNVDADFEPLYIVSPDKKATVTELKGLLKDVDELYLATDGDREGEAIAWHLLETLKP
RIPVKRMVFHEITEPAIRAAAESPRELDIDLVDAQETRRILDRLYGYEVSPVLWKKVAPK
LSAGRVQSVATRIIVQRERERMAFRSAEYWDIVAELDASVSDPNAHPPVFNARLVNVDGL
RVATGRDFDSVGAVKKPTEVVVLDEAATGALVNGLSGAQLSVSSVEEKPYTRRPYPPFMT
STLQQEAGRKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSASAIDAARNQARQLYGEE
YVYPTARQYTRKVKNAQEAHEAIRPAGDTFATPDAVRRELESDEFRLYELIWQRTVASQM
ADARGTTLSLRITGEAAGAEGTRTVTFSASGRTITFPGFLKAYVETVDELAGGEADDAER
RLPNLKQGQQVQAQKLTPDGHSTNPPARYTEASLIKALEELGIGRPSTYSSIIKTIQDRG
YVHKKGSALVPSWVAFAVIGLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFY
FGGEHGVEGSVARDGGLKQLVGGNLEGIDAREVNSIKLFDDAEGRAVNVRVGRNGPYLER
MIADPDNPGELKPQRANLKDELTPDELTLELAEKAFATPQEGRSLGIDPATGHEIVAKDG
RFGPYVTEVLPEPENPDDGSAGSPAKKGKKPTGPKPRTGSLLRTMDLETVTLEDALRLLS
LPRVVGIDPNSNEEITAQNGRYGPYLKRGTDSRSLATEEQMFTIDLDEALKIYAEPKRRG
RQAAAAPPLRELGTDPVSGKPMVIKDGRFGPYVTDGETNASLRKGDEVMSVTDERASELL
ADRRARGPAKKAARKTTKKAPAKKAAKRTAKKA

NT seq 2802 nt +upstreamnt +downstreamnt
ttggctgacggcaatggaagcgtccggcgactcgtcatagtcgagtcgcccaccaaggcg
cgcaaaatcgcgagctatctcggctcgaactacattgtcgagtcctcgcgcggccacatc
cgtgacctgccgcgggccgccgcggacgtacccgccaagtacaagtccgagccctgggcc
cgcctcggggtcaacgtggacgccgacttcgagccgctctacatcgtcagccccgacaag
aaggccacggtcaccgagctcaagggcctgctcaaggacgtcgacgagctctacctggcg
acggacggtgaccgcgagggtgaggccatcgcctggcacctgctcgagacgctcaagccc
cgcatcccggtcaagcggatggtgttccacgagatcaccgagcccgccatccgtgccgcc
gccgagagtccgcgcgaactggacatcgatctggtcgacgcgcaggagacccggcgcatc
ctggaccggctctacggctacgaggtctcgcccgtgctgtggaagaaggtcgcgccgaag
ctcagcgccggccgggtgcagtcggtcgcgacgcggatcatcgtgcagcgcgaacgcgag
cggatggcgttccgcagcgccgagtactgggacatcgtggccgaactcgacgccagcgtg
tccgatccgaacgcccacccgccggtgttcaacgcccggctggtcaacgtcgacggcctg
cgcgtggccaccggccgggacttcgactcggtgggcgcggtcaagaagcccaccgaggtg
gtggtgctcgacgaggccgccaccggtgccctggtcaacgggctgtccggcgcccagctg
tcggtgtcctcggtcgaggagaagccctacacccgtcggccgtacccgccgttcatgacc
tcgacgctgcagcaggaagcgggtcgcaagctgcggttctcctccgagcgcaccatgagc
atcgcccagcggctctacgaaaacggttacatcacctacatgcgtaccgactcgacgacg
ctgtcggccagcgccatcgatgctgcgcgcaaccaggcccggcagctctacggcgaggag
tacgtctatccgacggcccgccagtacacccgcaaggtcaagaacgcccaggaagcccac
gaggcgatccggcccgcgggtgacaccttcgccacccccgacgcggtgcgtcgcgagctc
gaatccgacgagttccggctctacgagctgatctggcagcgcaccgtggcctcgcagatg
gccgacgcccgcggcaccacgctgagcctgcggatcaccggcgaggccgccggcgccgag
ggcacccgcaccgtgaccttctcggccagcggccgcaccatcaccttccccggcttcctg
aaggcctacgtcgagacggtcgacgaactcgccggcggtgaggccgacgacgccgagcgg
cgcctgccgaatctcaagcagggccagcaggtccaggcgcagaagctgacccccgacggg
cactccaccaacccgccggcccgctacaccgaggcctcgctgatcaaggcgctcgaggaa
ctcggcatcggccgcccgtcgacctattcgtcgatcatcaagaccatccaggaccgcggc
tacgtccacaagaagggcagcgcgctggtgccgtcctgggtggcgttcgccgtgatcggt
ttgttggaacagcatttcggtcggctggtcgactacgacttcaccgccgccatggaggac
gaactcgacgagatcgccgccggcaacgagcgacggaccaactggctcaacaacttctat
ttcggcggcgagcacggtgtggagggctcggtcgcccgggatggcggccttaagcagctg
gtcggcggcaacctggagggcatcgatgcccgagaggtcaactccatcaagctgttcgac
gacgccgaaggtcgcgcggtcaacgtccgggtcggtcgcaacgggccctacctggagcgg
atgatcgccgatccggacaatccgggtgagctcaagccgcagcgcgccaacctcaaggac
gagctgaccccggacgagttgaccctggagctcgccgaaaaggctttcgccacaccgcaa
gaggggcggtcgctgggcatcgacccggcgaccgggcacgagatcgtcgccaaggacggc
cgcttcggcccgtacgtcaccgaggtgctgccggagccggagaaccccgacgacggcagc
gccggcagcccggccaagaagggcaagaagccgaccggccccaagccgcgcaccggttcg
ctgctgcgcacgatggacctcgagaccgtcaccctcgaggacgcgctgcggctgctgtcg
ctgccgcgggtggtcggcatcgacccgaactccaacgaggagatcaccgcgcagaacggc
cgctacggtccgtacttgaagcgcggcaccgactctcgctcgctggccaccgaggaacag
atgttcaccatcgacctcgacgaggcgctgaagatctacgccgagcccaagcgccgcggc
cgccaggccgccgcggccccgccgctgcgcgagttgggcaccgacccggtgtcgggcaag
ccgatggtgatcaaggacggccgcttcggcccgtacgtcaccgacggtgagaccaacgcc
agcctgcgcaagggcgacgaggtgatgtcggtgaccgacgagcgcgcctcggagttgctg
gccgaccgccgcgcgcggggaccggcgaagaaggcggcccgcaagaccaccaagaaggcg
ccggccaagaaggccgccaagcgcaccgccaagaaggcctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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