KEGG   Mesorhizobium ciceri biovar biserrulae: Mesci_3564
Entry
Mesci_3564        CDS       T01401                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
mci  Mesorhizobium ciceri biovar biserrulae
Pathway
mci03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mci00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mesci_3564
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mci03019]
    Mesci_3564
   03009 Ribosome biogenesis [BR:mci03009]
    Mesci_3564
Enzymes [BR:mci01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Mesci_3564
Messenger RNA biogenesis [BR:mci03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Mesci_3564
Ribosome biogenesis [BR:mci03009]
 Prokaryotic type
  rRNA processing factors
   Mesci_3564
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ADV12684
UniProt: E8TLD3
Position
complement(3716596..3719544)
AA seq 982 aa
MPNKMLIDASHPEETRVVVIRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEENEDGDGDDRQSRDRGRRGR
RRGGKPRDRGEHKRDAADSGEASDAADEAEEGADAGVEDISHTSEIIEHAADSSEHADAS
EHGEDSAEQDEGEIREGGPTSIAASVEADVISEAVPLAEQGSEATSGDNDRGMLEEVQSS
HPDDHEVESVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTT
YLSLAGRYSVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTK
AEIKRDYEYLMRLWENVRNLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGEEGY
REAKDFMRMLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEA
LVAIDVNSGRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRS
VEKRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSS
VALMVVRAIEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITVEADDSV
GSQHYAIFRGALAEKPEGFVEARSFPAYVEPDEPEDEIAVIEEDDEAPIQAEQPRQQPQQ
QQPRPAAGGEEGEGRDRKRRKRRRRRGGKDRDREHGAPADGASVSAPAGEFSDSDSAAGD
GDAEADDNAPVGVSETPATAEASDEGQGKKRRRGKRGGKRNRREDGEGEAEASAGEAADA
SEGEVSATEVIASEPVVTAAAEEPVVLAPANDDAPSTEKPKKPRRAAKPKKAAAEIVAEE
PAAEAEAPVETPATASDEAAAVEKAPKARPSRRKPAAVNAPVEPVVSSTVAEEPAAKAED
KTDDKTDDKPKRGGWWQRKGFF
NT seq 2949 nt   +upstreamnt  +downstreamnt
atgcccaacaaaatgctgatagacgcctcccacccggaggaaacacgcgttgtcgtcata
cgcggtaaccgtattgaagaattcgactttgaatcccaggacaagaagcagctcaaagga
aacatctacctagcccgcgtaacgcgcgtagagccctcccttcaggcagcctttgtcgaa
tatggcggcaaccgtcacggttttctcgccttcagtgaaatccaccccgattactaccag
attccggtcgccgatcgtcaggcactgctgcgcgcggaagcgcaggaggctgaggacgag
gagaacgaggacggcgacggcgatgatcgccagagccgcgatcgcggacggcgcggccgc
aggcgcggcggcaagccccgcgaccggggcgagcacaagcgcgatgcagccgattccggc
gaggcgagcgacgctgccgacgaggcagaagaaggtgccgacgctggtgtcgaggacatc
tcgcacacgtccgagatcatcgaacatgcggctgattcgtccgaacatgcagatgcgtcc
gagcatggcgaggattcggccgaacaggacgaaggcgaaatccgcgaaggcggcccgacg
tcgatcgccgcctcggtcgaggccgatgtgatttccgaagccgtcccgctggccgaacaa
ggcagcgaagcgacctccggcgacaatgatcgcggcatgctggaagaagtgcagtcctcg
catccggacgatcacgaggtcgaatcggtcggcgccgaggatgcgctggaagaagtgcgc
aaccgccgcaagccggtgcgccgccagtacaagatccaggaagtgatcaagcgccggcag
atcctcctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacc
tatctgtcgctggccggccgctattcggtgctgatgccgaacacggcgcgtggcggcggc
atttcgcgcaagatcaccagcgcggtcgaccgcaagcggctcaaggaggtcgtcgccgat
ctcgaagtgccgcagggcatgggcgtcatcctgcgcaccgccggcgagagccgcaccaag
gcagagatcaagcgcgactacgaatatctgatgcggctttgggaaaatgtccgcaatctc
accttgcagtccacggcccctgccctggtctacgaggaaggcagcctgatcaagcgctcg
gtgcgcgacctctacaacaaggatatcgacgagattcttgtctccggcgaggaaggctac
cgcgaggccaaggacttcatgcgcatgctgatgccgagccacgccaaggtggttcagccg
ttccgcgacacgacgccgatcttcgtacgcaacggcatcgaggcacagctcgaccgcatg
ctgcagccgcaagtgacgctgaagagcggcggctacatcatcatcaaccagaccgaagcg
ctggttgccatcgacgtgaattcgggccgctccaccaaggagcactcgatcgaggacacc
gcgctccacaccaatctggaagcggccgaggaagtcgcgcgtcagctaaggctgcgcgat
cttgccggcctgatcgtcatcgacttcatcgacatggaggagaaccgcaacaaccgctcc
gtcgagaagcggctgaaggatcacctcaagaacgatcgtgcgcgcatccaggtcggccgt
atctcgcatttcggcctgatggagatgtcacgccagcgcatccgcgccagcgtgctggaa
tcgaccatgaagccttgcccgcattgcggcggcaccggccatgtgcgctccgattcgtcg
gtcgcgctgatggtggtgcgggcgatcgaggaattcctgctcaaggattcgcgcagccac
atcacggtgcggacgccggcggcgacagcactctacgtgctcaaccacaagcgcggcacg
ctggtggaactcgaaagccgcttcgggctgacgatcaccgtcgaggccgacgattcggtg
ggttcgcagcactatgcgatcttccgcggcgcgttggctgaaaagccggaaggctttgtc
gaggcgcgcagcttcccggcctatgtcgagccggacgagcccgaggatgagattgccgtc
atcgaggaagacgacgaggcgccgatccaggcagaacagccacgccagcagccgcagcaa
cagcagccgcggcccgctgccggtggtgaggaaggcgaaggccgcgaccgcaagcgccgc
aagcgtcggcgtcggcgtggcggcaaggatcgcgatcgcgaacatggcgcccctgcggac
ggtgcttccgtctcggctccggccggcgagttttcggactcggactcggccgccggagat
ggcgacgcggaagcggacgacaatgcccctgttggtgtttccgaaactcctgccacagct
gaagcttcggacgaaggccagggcaagaagcgccggcgcggcaagcgcggcggcaagcgc
aaccgccgcgaagacggtgaaggcgaggctgaggcaagtgctggcgaagcagccgacgcg
tccgaaggcgaagtctcggcaaccgaggtgatcgccagcgagccggtggttaccgcagcg
gccgaagagccggtggtgcttgctccggccaatgacgacgcgccgagcacggagaagccg
aagaagccacgccgtgccgccaagccgaagaaggccgcagccgaaatcgtcgccgaagag
ccggctgccgaggcggaagcaccggtcgagacgccggccacggcgtccgacgaagcagcg
gctgtcgagaaggcaccgaaggcccgcccgtcgcggcgcaagccggcggcggtgaatgcg
ccggtcgagccggtggtgtcttcgaccgtagcggaagaacccgcggccaaggccgaggac
aagaccgacgacaagaccgacgacaagccgaaacgcggcggatggtggcagcggaagggc
tttttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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