KEGG   Methanothrix soehngenii: MCON_2107
Entry
MCON_2107         CDS       T01468                                 
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase, putative
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
mcj  Methanothrix soehngenii
Pathway
mcj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MCON_2107 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcj03019]
    MCON_2107 (rhlE)
Messenger RNA biogenesis [BR:mcj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     MCON_2107 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 P-loop_SecA Shikimate_DH AAA_19 SMC_N AAA_22 Nuc_rec_co-act ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AEB68647
UniProt: F4BX91
Position
complement(1793426..1794709)
AA seq 427 aa
MSFGNLNIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPIL
QRMSAERRASRPGSPRVLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNM
LSRGVDILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKH
SSLFFSATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVFFVDQNSKNSLLLDLLL
KEDMKRVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRVLVA
TDIAARGIDIDDITHVVNYDLPNEPESYVHRIGRTGRAGASGNAFSFCSAEERSFLKDIE
RLTREKIEEREHKYHSPRAKAATGADAKPLSPARSRVTRVQQRPVGGKVPGKQATSHRIS
HPAKVAC
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgtcatttggaaatctgaatataatagatccgctcttgcgagcgattgctctagaagga
tataccacccccacgccgatacagatgctggccatacccccattactcgagggaaaagat
ctgctggggatcgctcagacgggaacgggaaagacggcggcatttgtgctgcccatactg
cagagaatgtcagccgagcggcgagccagccggccgggctcaccgcgggtgctggtgctt
gctcctaccagagagcttgctgcccagatcggccagagctttgccacctatggcaagttt
ctccgcttcagacaactggtcatattcggcggcgtccgccaggggccgcaggtcaatatg
ctctcccgaggagtcgatatactagtcgccactcctggcaggctcttggacctgatgaac
cagggctacatagagctgaaaggggttgagttcttcgtcctggatgagatcgacaggatg
cttgacatgggcttcataagagacgtgaagaggatagtctcggctctgccggagaagcac
agctcccttttcttctctgccactctgacccgggagacgggcgagcttgcccagagcctt
cttaatgatccggtgcatgtgcaggcctctccctcggcgtgcactctggactccatcgat
cagcaggtattctttgtcgatcagaactccaagaactcccttctgctcgatctcctctta
aaagaagatatgaagagggtcctggtcttcgcccgcaccaagcaccgggcggataaggtg
gcgcagatgctgtccaaaaacaggattcagtcggatgccattcatggcaacaagtcgcaa
aaccagcgcactaagactatggaaaggttccgatcaggcaggataagggtgctggtggcg
accgacatcgccgcccggggcatagatatcgatgatatcacccatgtggtgaactatgac
ctgccaaatgagccagagagctacgtccaccgcatcgggcgcaccggcagggcgggagct
agcggcaatgcattctctttctgctctgcagaagagcgcagcttcttgaaggatatcgag
aggcttacccgggagaagatagaggaaagagagcataagtatcattctccccgggcaaag
gcggcaactggcgcggatgcaaagcccttatcccctgccaggtcaagggtcacccgggtt
cagcagaggccggtcggcggtaaggtcccgggcaagcaggccacttctcatcgcatatca
catccggccaaggtcgcctgctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (23)   

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