KEGG   Mycoplasmopsis columboralis: NCTC10179_00260
Entry
NCTC10179_00260   CDS       T06766                                 
Symbol
vacB
Name
(GenBank) VACB-like ribonuclease II
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mcou  Mycoplasmopsis columboralis
Pathway
mcou03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcou00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCTC10179_00260 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcou03019]
    NCTC10179_00260 (vacB)
   03016 Transfer RNA biogenesis [BR:mcou03016]
    NCTC10179_00260 (vacB)
Enzymes [BR:mcou01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NCTC10179_00260 (vacB)
Messenger RNA biogenesis [BR:mcou03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NCTC10179_00260 (vacB)
Transfer RNA biogenesis [BR:mcou03016]
 Prokaryotic type
  tRNA degradation factors
   NCTC10179_00260 (vacB)
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB SOTI
Other DBs
NCBI-ProteinID: VEU76095
UniProt: A0A449B6B2
Position
1:complement(338927..341128)
AA seq 733 aa
MKIEEIYQFIKTSKAKNFLEIARHFKIKPKDNHLLNKALAALQKDCRVFRNEKDEYYAPE
LVETTSGVFVASPKGSFGFVDYDIDEENKTKKSVFVKSFNFNGAITNDVVQVNVYVNPHD
ENNLNYGVITNILERKNDSIIGFIKQKNNTFYFVPSDQRFKNCTWALMPSGVTYKLNDLV
VARILKYDAKIVYISVAKVITNEADPMVFVKAYLESIKAPDNFPEFLKDEINQIPDDIYS
DDLSNRVDLRDKLIVTIDGDDTKDFDDAINVEKLSNGNWKLGVYIADVSYYVKENTLLDK
EALNRGTSTYLVDRVIPMLPEKLSNGICSLNPDEDRFVLGCEIEINQFGENVKTNIFQGI
INSKFRLTYKNVNAFYENGFIDTTNHPHLSEQLEQMLYQAKELSLIIHNFKTNQGYIDFE
IDEPKIKLDELGHVKDIVISERGFSEVLIEDFMVRANEVVAKTLYDKKLPVLYRVHEVPN
EEKLQSLINALEVVNLPTPEFKYYEITPKLFANFVEQVKSKRDDDFVKLLFLRTMQKAVY
SQNNIQHFGLASEFYCHFTSPIRRYPDLIIHRIIRDYLIDKKPLQIEKLQAQLDIFGDLN
TASEQKAVQTERKVNDLKFAEYLKSKVGQSFKAQILSVLNFGFFVEFEFKASGLVHKSNL
FDGDFEINETVTKLVSKNKIYTIGDVVEVTVINVDLLEGKVDCVLTSQYPQFLNKLNKDK
EERNKRNAKRVEK
NT seq 2202 nt   +upstreamnt  +downstreamnt
atgaaaattgaagaaatatatcagtttataaaaacttcaaaagccaaaaactttttagaa
attgctcgacattttaaaatcaaacctaaagataatcacttgctcaataaagctctagca
gctttgcaaaaagattgtcgtgtttttagaaatgaaaaagacgaatactatgctccagaa
ttagtggaaaccacttcgggagtttttgtcgcttctcctaaaggtagttttggatttgtt
gattatgatattgatgaagaaaacaaaactaagaaaagtgtttttgtaaaatcatttaat
tttaatggtgctattaccaatgatgttgtacaggtaaatgtttatgtgaatccacacgat
gaaaataacttaaactatggtgttatcactaacattttagaacgtaaaaatgattcaatt
attggttttatcaaacaaaagaacaacactttttattttgttcctagtgatcaacgtttt
aaaaattgtacctgagcattgatgccttcaggtgtgacttacaaactaaatgatttagtt
gtggcaagaattttaaaatatgatgccaaaattgtttacattagcgttgctaaagtaatt
actaacgaagctgatccaatggtttttgttaaagcttatttagaatctattaaagcgcca
gataattttccggaatttttaaaagatgaaataaatcaaattcctgatgatatttattca
gatgatttaagtaaccgagtagatttaagagataagttaattgtcaccattgatggagat
gatactaaagattttgatgatgctataaacgttgaaaaactttcaaatggtaactgaaaa
cttggagtgtatattgctgatgtttcttattatgtaaaagaaaataccttacttgataaa
gaagctttaaatcgtggtactagcacctatttagttgatcgagttattccgatgcttcca
gaaaagttgtctaatggaatttgttcacttaatccagatgaagatcgttttgtattagga
tgcgaaattgaaattaatcaatttggcgaaaatgttaaaactaatatttttcaaggaatt
attaatagtaagtttagattaacttataaaaatgttaatgctttttacgaaaatggattc
atcgatactaccaatcacccgcatttaagcgagcaactcgaacaaatgctttatcaagct
aaagagttaagtttaattattcacaatttcaaaactaaccaaggatacattgattttgaa
attgatgaacctaaaattaaattagatgaactaggacatgttaaagacattgtaattagt
gaacgtggttttagtgaagttttaattgaagactttatggttagagccaatgaagtagtt
gctaaaactttatatgataaaaaacttcctgtgttataccgggtgcatgaagttccaaat
gaagaaaaacttcagagtttaattaatgctttagaagttgtgaatttacctactcctgaa
tttaaatattatgaaatcacaccgaagttatttgctaattttgttgagcaagtaaagagc
aaacgtgatgatgattttgttaaattgttgtttttgcgtactatgcaaaaagcagtatat
tcacaaaataacatccagcactttggattagcaagtgagttttattgtcactttacttct
ccgattcgaagatatccagatttaattattcaccgcattattcgggattatctaattgat
aaaaaaccactacaaattgaaaaattgcaagctcaattagatatttttggtgatttaaac
accgccagcgaacaaaaagcggttcaaactgaacgtaaggttaacgatcttaaattcgca
gaatacttaaaatcaaaagttggacaaagttttaaagcacaaattttaagcgtattaaat
tttgggttttttgtggaattcgaatttaaagcaagtggattagtgcataaaagcaatctt
tttgatggcgattttgaaattaatgaaacagtaacaaaattagtttcaaaaaacaaaatt
tataccattggtgatgtagtggaagtaacagttattaatgttgatttacttgaaggaaag
gttgattgtgtactaacttcacaatatccacagtttttaaacaaattaaataaagataaa
gaagaacgtaacaaaagaaatgcaaaaagagttgaaaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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