KEGG   Methylomonas sp. DH-1: AYM39_21790
Entry
AYM39_21790       CDS       T04396                                 
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
mdh  Methylomonas sp. DH-1
Pathway
mdh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mdh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AYM39_21790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdh03400]
    AYM39_21790
Enzymes [BR:mdh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AYM39_21790
DNA repair and recombination proteins [BR:mdh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AYM39_21790
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_11 AAA_30 MinC_N AAA_25 ResIII
Other DBs
NCBI-ProteinID: ANE57930
UniProt: A0A172UF05
Position
unnamed:complement(54545..58258)
AA seq 1237 aa
MSTAIALNPVTFPLSGTRLIEASAGTGKTYTIAALYVRLILGHQPDDSLPRRELLPPEIL
VVTFTEASTKELRERIRERLSQVARFFREKPVKSDAFLEAIRADYDPALWPACARRLELA
ANWMDEAAVYTIHSWCNRMLQQHAFDSGSLFHQEVNTDDTELLNEVVRDYWRTFYYEMAH
DDPDFLALYGLFQQPDNLLGEIRSLLNNADPIPDCLTPDQDIKTLMTAVNTAKQEALQLL
KQPWGVWADEIKALVETAVKNKVLPGVNYKSNSIQSWIGKIATWSSDPNQESLDLLTGFK
SLSPAGMANLAKSGQTPPVHPGFEAISRLPGQLAALPNLKIELIKHAIHWIRNRYDSEKQ
RVARMTFDDMLTRLDQALQGNNGQRLASVIRQQYPIALIDEFQDTDPVQYRIFSTLYPAE
GNAELGCLMIGDPKQAIYSFRGADIYTYLRAHQDTEGKHYTLGTNYRSTQHLVDAVNQVF
LYADQQPNGAFRFKRENDNPLPFIAVAAQGREDEWVINDLAAPALTLWHWDITDADGQLK
PVGLPEYRQTMAEVTASEIVGLLNLATQGRTGFKSSKKLKSLQPSDIAILVRSGAEAKVM
RNALARRQLRSVYLSERDSIFASREAKDLLLWLKALAEPRNERKVRTALSTATFGWSYQA
LQQLAIDEPGWEEQLERFLGYQARWQQDGILPTLRQLMSDYGLHARLTADSEGERCITNL
LHLAELLQQASGQLEGEQALIRYLAEAIEAESSQSGDEGIIRLESDANLIKIVTIHKSKG
LEYPLVFLPFICSFREINSRFNTHYRYHDEQQILNIDLTKADDIRALSDEERLQEDLRLL
YVAMTRAQHACWLGIAPIKFGNTKECQLEKSAMGSLLNWQAGLSVGALGSQLTHLKGHCE
SILLTGLPTINDELYLAPQQTEQLESTRTAAARIANNWWVASYSALQIEETQLIQEEQPP
LPQELETARDDKQNDEADLNLAPTLKPLAGIHGLARGSGPGVLIHDLLEQCAQLGFSTVQ
ANPALGQQLIQKGFTASEWTHKQEIIASALSVWLSMPLLEGENLSLAQLGADDYQAEMEF
LLGADAVNVQALDQLVTRHTFAGLPRPSLLPRFVNGLLKGFMDLVFVYQQQYYVVDYKFN
SLGNDDASYTQEALEQAMLSKRYDLQYSLYLLALHRLLKVRLGEQYDYDTHIGGGLYLFL
RGSQSPSGGRLLTKPPRELIEGLDKLFSASTLNGDTL
NT seq 3714 nt   +upstreamnt  +downstreamnt
atgagtacggctattgcgttaaatccggtgacgtttcccttgtccgggacccgcttgatt
gaggccagcgccgggacgggtaagacttataccattgcggcactctatgtgcgcttgata
ctggggcatcaacccgacgactcacttccgaggcgtgagttattgccaccggaaattctg
gtggtcacgtttactgaagcttcgactaaagagttgcgcgaacggattcgagagcgtctt
agccaggtcgcgcgttttttccgtgagaaaccggtgaaaagcgatgcctttctggaagcc
atccgcgcggattatgatccggctctctggccagcctgtgcccggcgtctggaactggcc
gccaactggatggacgaagcggctgtctataccatccatagctggtgtaatcgcatgttg
caacaacatgcgttcgatagtggcagcctgtttcatcaggaggtcaataccgacgatacc
gaactgttgaacgaagtggttagagattattggcgcacgttctattacgaaatggcgcac
gacgacccggactttctggcgctctatggcctttttcagcaaccggataacttactcggg
gaaattcgatcgctgttaaataacgccgatccaattccagactgcctgacgcccgatcaa
gacatcaaaaccttgatgaccgcagtcaataccgccaaacaagaggctttgcaattactc
aagcagccctggggagtatgggcagatgaaattaaagcgttagtggaaacagcagttaaa
aacaaagtactgcctggcgtaaactataagtccaattccattcagagctggatcggtaaa
atagcaacctggagttctgatccaaatcaggaatcgcttgatcttctaacgggttttaaa
agcctttcgccggccggtatggcaaacctcgccaaatcgggtcaaacgccacccgtgcat
cccggctttgaggcgattagccgattaccggggcaactcgcggcattaccgaatttaaaa
atcgaactgatcaaacacgccatccactggattcgcaaccgttacgacagtgaaaagcaa
cgtgtggcgcggatgacgttcgatgacatgctgacccgccttgatcaagccctgcaaggc
aacaacggtcagcgcttggcaagcgtgattcggcagcaataccccatcgccttaatcgat
gagtttcaggataccgacccggttcaataccgtattttttccaccctgtatccggcagag
ggcaatgctgagttgggctgcttgatgataggcgatcctaaacaagcgatctactcgttc
cggggggccgatatttatacctatctcagggcgcatcaagatacggaggggaagcattac
acgctaggcactaactaccgctctacccaacatctggtggacgcggtgaatcaggtcttt
ctatatgccgatcagcagcccaacggggcttttcggttcaaacgcgagaatgataatccc
ttgccgttcattgctgtggccgcccagggccgtgaggatgaatgggtcatcaacgatctg
gcggcgccggccttaacgctctggcattgggatatcaccgatgccgatggccagctaaag
cccgtgggactgccggaatatcggcaaaccatggccgaggtgacggccagcgagattgtg
ggcttgctgaatttggcgacgcaaggccgtaccggttttaaatcatcaaaaaagttaaag
tccttacaaccttcggatattgcgattttagtcagaagcggcgccgaagccaaagtgatg
cgaaacgcactggccagacgccaattgcgtagtgtttatctgtccgagcgcgactcgatc
tttgccagccgtgaggcgaaagacctgttgctgtggctgaaagcgctcgccgaaccgcgt
aatgaacgcaaggtgcgcaccgcgttaagtaccgccacctttggttggtcttatcaagcg
ctgcagcaactggcgatagatgagccaggttgggaagagcaattggaacgtttcctgggt
tatcaggcgcgctggcaacaggatggtattttgccgaccttgcggcaactgatgagcgat
tatggcttgcatgcgcggctcaccgcggacagtgaaggcgaacgctgcatcactaatcta
ttgcatctggcggagcttctgcaacaagccagcggccagctcgaaggcgagcaggcttta
atccgttatctggcggaggctatcgaagccgagagtagtcaatccggcgacgaaggtatt
atccgtctggaaagcgatgccaatctgatcaaaatcgtcaccatccataaatccaagggc
cttgagtatcccttggtgtttctgccttttatatgcagctttcgggaaatcaacagccga
ttcaatacccactaccgctatcacgatgaacagcaaatcctcaacatcgatttgacgaag
gcggatgacattagggcgttaagcgatgaagaacgcctgcaggaagacttgcgcttactg
tatgtcgccatgactcgagcgcaacatgcctgctggttagggatagcgccgattaaattc
ggcaataccaaggaatgccagctggaaaaatccgccatgggttcgctgttgaactggcaa
gccggactgtccgtcggcgcgttgggttcacaactgacgcacctgaaaggccattgcgag
tccatcctgctgaccggcttacccaccatcaacgatgagctttaccttgccccgcaacaa
acggagcaattggaatccacgcgcactgccgccgccagaattgccaataattggtgggtg
gcaagctatagcgccctgcaaattgaagagactcagttgatccaggaggagcaaccgcct
ctgccgcaagaactggaaaccgcccgggacgataaacaaaatgatgaagcggacctgaat
ctcgcgccgacgctaaagccactggccggcattcacggtttagcccgaggctcagggcct
ggggtgttgattcatgacctgctggagcaatgcgcacaattaggtttttcgactgtgcag
gccaatccggcgctaggccaacaattaatccaaaagggctttaccgccagtgaatggact
cacaaacaagagattattgcctcggcattatcggtctggttaagcatgcccttgttggaa
ggtgaaaatctgagtttggctcaactgggtgccgatgactatcaggctgaaatggagttt
ctgctgggggcggacgccgtcaatgttcaagccttagaccagctggtgacccgacatacc
tttgcagggcttccccggccgagtttgctgccgagattcgtcaacggcttattaaaaggc
tttatggatttggtgtttgtgtatcagcagcaatattacgtggtggattacaagtttaat
agcctgggcaatgatgatgcgagttatacgcaggaggctcttgaacaggcgatgctgtca
aaacgctacgatttgcaatattcactctatttactggcgttgcatcgtttgctgaaggtt
cggctgggtgaacagtacgattacgatacgcatatcggcggcggactgtacttatttctg
cgtggatcgcaaagcccaagcggtggccggctgttgactaaaccgccgcgtgaactcatc
gagggcctggataaactgttttcggcatcgacgctgaatggagacacactatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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