KEGG   Methylorubrum extorquens DM4: METDI3683
Entry
METDI3683         CDS       T00947                                 
Symbol
rnd
Name
(GenBank) Ribonuclease D (RNase D)
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
mdi  Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:mdi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mdi03016]
    METDI3683 (rnd)
Enzymes [BR:mdi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     METDI3683 (rnd)
Transfer RNA biogenesis [BR:mdi03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    METDI3683 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-ProteinID: CAX25322
UniProt: C7C9X0
Position
complement(3622140..3623294)
AA seq 384 aa
MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD
LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVCGYGDSVSYEQ
LVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLD
EEMAVLTSPETYQAEPAQAWRRLSGRMRKPREIAVLMEVAAWREAEAQSRNVPRGRILKD
EAVIDIATAGPRSVEALGRLRTIPAGFERSRTGTEILAAVERGFARDPSQIAVPERSRSR
GGGSGALIDLLKVLLKAVAEAEGVAPKIIATVDDLEALAEDDAADVAVLQGWRRSLFGDK
ALALKHGRMALSVERGRVTVRELP
NT seq 1155 nt   +upstreamnt  +downstreamnt
atggaactgatctccgcaacgcaggctctgtccgacgcctgcacccaattcgccgcgcag
ccgttcgtgaccgtcgatacggagttcatgcgcgagacgacctactatccgaagctctgc
ctgatccagatggccgggcccgacggattcgcctgcctcgtcgatccgctcgcgaaagac
ctcgatctcaagccgttcttcgacctgatggccgatgagagcaccgtgaaggtgttccat
tcggcccggcaggatctggagatcatctggctgctcggcgggctgctgccgcagccgttc
ttcgacacgcaagtcgcggccatggtctgcggctacggcgactcggtctcctacgagcag
ctggtcaacgatgtcgccaaggcgcgcatcgacaaatcctcccgcttcaccgattggtcg
cggcgccccctgtccgaggcgcagctcgcctacgccctgtcggacgtcactcatctcgtg
acgatctatcaggtgctcgcggccgaactgctgagcaccgaccgcggcctctggctcgac
gaggagatggcggtcctcacctcgccggagacctatcaggccgagcccgcccaggcgtgg
cgccggctctcggggcggatgcgcaagccgcgcgagatcgccgtgctgatggaagtggcc
gcgtggcgcgaggcggaggcccagagccgcaacgtcccccgcgggcgcatcctcaaggac
gaggcggtgatcgacatcgccaccgccggcccccgcagcgtcgaggccctgggacgcctg
cgcaccatcccggccggcttcgagcgctcgcgcaccggcaccgaaatcctcgccgcggtc
gagcggggctttgcccgcgacccgtcgcagatcgccgtgcccgagcgcagccgctcccgc
ggtggcggcagcggcgcgctcatcgatcttctcaaggtgctgctcaaggcggtggccgag
gccgagggcgtagcgcccaagatcatcgccaccgtcgatgacctcgaagcactcgccgag
gacgacgccgcggatgtggccgtgctccagggctggcgccgctccctgttcggcgacaag
gccctggcgctcaaacacgggcgcatggcgctctcggtcgagcgcggccgggtcaccgtg
cgcgaactgccgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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