KEGG   Malus domestica (apple): 103402492
Entry
103402492         CDS       T03194                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
mdm  Malus domestica (apple)
Pathway
mdm03013  Nucleocytoplasmic transport
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103402492
   03015 mRNA surveillance pathway
    103402492
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103402492
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     103402492
   mRNA cycle factors
    P-body specific factors
     103402492
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2 phi29_gp9_C
Other DBs
NCBI-GeneID: 103402492
NCBI-ProteinID: XP_028949681
Position
15:complement(53905032..53914054)
AA seq 489 aa
MMKGQLDRTKVVLRHLPPSISQAALVEQIDVFFAGRYSWVAFRPGKRSQKNQSYSRAYID
LKRPEDVFEFAEFFDGHLFVNEKGGQFKVIVEYAPSQRVPEHWSKKDGREGTIFSDPEYL
EFLEFIAKPAENLPSAELQLERREAERSGAGKDAPIVTPLMDFVRQKRAAKAGSRRLLSN
GKASRRAGVSSSRSPTLPMTKRGSERKKNSASMGLSDLQYVVRDARKNTGDKNKSTHILV
PKREDQQPSEKSATLASAVGTELSEESGVSGVDAGKKKVLLVKGKEKEISHVPPNMSQQQ
SSYSKNMGGSIALKQNPRCHDNGRIIKGILLNKEARQSQSSGIHSGQQIQSSSSDRDKRF
PRSQHVQLILKDINGTPDHKIVGNDLHDIYSEKQEKRTKNKDRPDRGVWTPLNRLDGSSA
SDESFSSAFQPDHSLLDSSEGSHKHHGRRGAKHGKELDGSPVAGEGKHSKKGYGSHEKQV
WIQKSSSGS
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgatgaagggccagttggatcgtaccaaggtggtgctgcgacacttgccgccttcgatt
tcgcaagctgcgcttgtggaacaaatcgacgttttctttgctggccgctacagttgggtt
gcttttcgtccgggcaagaggagccaaaagaatcagtcatattctagagcctacattgat
ttgaagaggccagaggatgtattcgagtttgctgaattctttgatggtcatctgtttgtt
aatgagaagggcggtcaatttaaagttattgttgagtatgctccatcacaacgtgttcca
gaacattggtctaagaaggatggtcgtgaaggaaccatattcagtgatcccgagtatctg
gagtttcttgaatttattgcaaagcctgctgagaatcttccaagtgcagagttacaattg
gagagaagagaagcagaacgatctggtgctggaaaggatgctcctatagttacaccatta
atggactttgttcgtcaaaaaagggctgccaaggctggatctcggaggttactgtctaat
ggtaaagcaagcagaagagctggtgtatcatcttctcgaagtcctactttacctatgacc
aaacgaggttctgagaggaaaaagaattctgcctcaatgggcctgtctgatttgcagtat
gttgtgagggatgctagaaagaacaccggtgacaaaaacaagtcaacacatatattggta
cccaagcgcgaggatcagcaaccttccgagaagtctgccactttggcatctgcagttgga
actgaattgtcggaagagagtggagtttctggtgtggatgctgggaaaaagaaagtcttg
cttgtgaaagggaaagagaaggagatatctcatgtgccgccaaacatgtctcagcagcag
agttcatattctaaaaacatgggtggttcaattgcactgaaacagaacccgcgttgtcat
gataatggaaggattataaaaggcatacttctaaacaaggaggcacgtcaaagtcagtct
tctgggattcactcggggcagcaaatccagagttcgagttcagatagggacaaacgattt
cctcgatcgcaacatgtgcaattgattttaaaggatataaatgggactccagatcataag
atagttgggaatgacttgcatgatatttatagtgagaagcaggagaaacggacaaaaaat
aaggacagacctgatcgtggtgtatggacgcctcttaatcgtttagatggatcatctgca
agcgatgagtctttctcatctgcttttcaaccggatcactcacttttagattcttcagaa
ggctctcataaacatcatggtcgccgtggagcaaaacatggtaaggaacttgatggctca
ccagttgcaggtgaaggaaaacattcgaagaaaggctatggctcccacgagaaacaagtg
tggattcagaagtcgagttctggttcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system