KEGG   Malus domestica (apple): 103439624
Entry
103439624         CDS       T03194                                 
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 6B-like
  KO
K22804  structural maintenance of chromosomes protein 6
Organism
mdm  Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103439624
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    SMC5-SMC6 complex
     103439624
SSDB
Motif
Pfam: SMC_N AAA_23 AAA_29 DUF3450 EzrA AAA_21 Com_YlbF Sipho_Gp157 SbcC_Walker_B FlaC_arch Med9 LRAT ABC_tran DUF948
Other DBs
NCBI-GeneID: 103439624
NCBI-ProteinID: XP_008376410
Position
7:32058008..32068119
AA seq 1051 aa
MGDPISGLRQRSGSGIVQRVRLENFMCHSSLQIELGDWVNFITGQNGSGKSAILTALCVA
FGSRAKGXQRASTLKDFIKTGCSNAVVQVELKNQGEDAFKPEIYGDIITVERRISGTTSA
TVLKDKQGRRVAARKEDLRELVEHFNIDVENPCVVMSQDKSREFLHSGNDKDKFKFFYKA
TLLQQVEDLLQNIEKQLEKAGVVVDELEGSIRPIERELNELQEKIKSMEHVEEISQKAKQ
LKKKLAWSWVYDVDKQLQEQNLRIVKLKDRVPRCQAKIDEKIGQVVKLRECFTLKKSEID
QMMAKTSEIRRMKDELQQTLTLATKEKIGIGEEYSRKANHIQKLMNAVRSLQQQIEDTQE
QHAKHTQAEESAIEEKLKELQNEVSTVESMLTRLKEEESALSECIQQINNEIREINQMIQ
NIDKNRREISSVIRELRQNQTNKVTAFGGQQVIYLLQSIERHHQRFTSPPIGPIGAHLTL
NNGDVWGPAVEHAIGRLLNAFIVTNHKDSLLLRACAKEAKYNNVQIIIYDFSLPRLHIPP
HMLPQTEHPTTLSRVHSENHTVLNVLVDRGDIERQVLVRDYDVGKTVAFDQRISNLKEVV
TLDGSRMFSRGSVQTVLPPNKRVRTGRLCSSYDDQISDLERQAKSVEEEDKQCMRRKRNA
EQNLQDLQEKLRNVKRRRAHADRDLASKRIALQDSAYAAEASTSPASTVDELHQEISKMQ
EEIQEKKMLLQKFRERTDEAEAKTHDLKVSYEKLCESAKGDIDAFEKAERELMETEENLA
SAEDEKAHYEGVMRNKVLRDIQEAEKEFQQLEHHREENCRKASILCPESEIIAMGDWDGS
TPEQLSALLTRLNQRLERESQRFTESIDDLRLSYKKKERKILERQKKYRAYREKLHACQK
ALNLRRSKFERNANLLKRQLTWHFNTHLGRKGMSGKIKIDDRERTLAIEVKMPQDASSST
VRDTRGLSGGERSFSTLCFTLSLHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALVQ
GSQWILITPHDISMVKNGERIKKQQMAAPRS
NT seq 3156 nt   +upstreamnt  +downstreamnt
atgggtgaccctatctccggcctccgccagcgttccgggtccggcatcgtccagagagtc
agattggagaacttcatgtgccacagtagcttgcagattgagctcggcgactgggtcaat
ttcatcaccggccaaaatggaagtggtaaaagtgcaatactgacagctctgtgtgtggcc
tttgggtctcgagctaaaggcnnacaaagggcgtcgacattgaaggatttcataaaaact
ggttgcagtaatgctgttgtccaagtggaactcaaaaatcaaggggaggatgcttttaag
cctgaaatatatggggacatcataacggtagagcgcaggatttctggaaccacaagcgcc
actgttttgaaggataaacaaggaagaagggttgctgctcgaaaagaggatcttcgagag
ctagtagaacattttaatattgatgtggagaatccttgtgttgtcatgagtcaagacaaa
agcagagagtttttgcattctgggaatgacaaagataaattcaagttcttttacaaggcc
acacttcttcagcaagttgaagatcttttgcaaaacattgaaaaacagttggagaaggca
ggtgttgttgttgatgaattagagggctcaataagacctattgaaagggaacttaatgag
ttgcaagaaaagattaaaagcatggagcatgttgaagaaatatctcaaaaagcaaaacag
ttaaaaaagaagcttgcttggtcatgggtatatgatgtggacaagcaactccaggaacag
aatttgagaattgtcaagctgaaagatcgtgtgcctcgatgtcaagctaaaattgatgaa
aaaataggtcaagtggtgaaactgagagaatgcttcaccttgaagaaatctgaaattgat
cagatgatggcaaagacatcagaaattaggagaatgaaggacgaattacagcagacacta
acattggccacgaaagagaagattgggattggagaagaatatagccgcaaagctaaccat
atccagaagttgatgaatgctgttaggtctcttcagcaacagattgaggatacacaggag
caacatgccaaacatacacaggcagaagaatctgcaatagaggaaaagctgaaagaactc
caaaatgaggtttctactgttgaatcaatgcttaccaggttgaaggaagaggagagtgcc
ttatcagaatgcatacaacagataaataatgaaatcagagagataaatcaaatgattcaa
aatattgacaagaatcgccgagagatctcaagtgttattcgtgagcttcgtcaaaaccaa
accaacaaggtgacagcatttggtggacagcaggtgatatacctcctacaatcgattgag
agacatcatcaaagattcacaagtcctcctattggtccaattggtgcccacctgactttg
aataatggagatgtctggggccctgctgttgaacatgccattggaaggttgctcaatgct
ttcattgtaacgaatcataaagactctcttcttctgagagcatgtgcaaaagaagcgaag
tacaacaacgttcagattatcatatatgacttttcattaccaaggttgcatatacctcct
cacatgcttccacaaacagagcacccaactactctttcccgtgttcattctgaaaatcat
actgttctaaatgttttggtagataggggagatattgaaaggcaagttcttgtacgagat
tatgacgtgggaaaaacagttgcttttgaccagaggatctcaaatttaaaggaggttgtc
actttagatggtagtaggatgttttctcgtggctctgtccagacagtactccctcccaat
aagagagttagaactggtcgtctttgtagttcttacgatgatcaaattagtgatcttgaa
aggcaagcgaaaagtgtagaagaagaagataagcagtgcatgaggagaaaaagaaatgca
gagcaaaaccttcaggatcttcaagagaagctccgaaatgtgaagaggaggcgtgcgcat
gcggaccgtgatttggcatctaagagaatagcgcttcaagacagtgcgtatgctgccgaa
gctagtacatcacctgcatcaactgttgatgagcttcaccaagaaatctcaaaaatgcaa
gaggagattcaagaaaagaaaatgttgctgcaaaagtttcgagagagaactgatgaagct
gaagcaaagacccatgatcttaaagtatcatatgagaaactatgtgagtcagcaaaagga
gatattgatgcctttgagaaagcagagagagaactgatggagactgaagaaaatctggct
tctgcagaagatgagaaagctcattatgaaggtgtaatgaggaacaaggtacttcgcgat
atccaagaagcagaaaaagaatttcagcagcttgagcatcatcgtgaggagaattgtaga
aaggcttctatcctttgtcctgagagtgaaattatagctatgggtgattgggatggtagc
accccggaacagctcagtgccctattaaccaggctgaatcagaggcttgagcgagagagc
cagagattcactgaatccattgatgaccttcgattgtcatataagaaaaaagaacgtaag
atattagaaagacagaaaaagtacagagcttaccgagaaaagttacatgcatgccagaaa
gccctaaatttgcgacgtagcaagtttgaaagaaacgcaaatcttttaaagcgccagttg
acatggcattttaatacccatctgggaaggaaagggatgagtgggaaaattaagatagat
gacagggagaggacccttgctattgaggtaaagatgccccaggatgcatcaagcagcact
gttcgcgacactagagggctttcaggtggagagcgctccttttcaacattgtgctttaca
ttgtctcttcatgaaatgacggaagccccgtttagagcaatggacgagtttgatgttttc
atggatgccgtaagccggaaaatcagcctagacactcttgtcgattttgcattggtgcaa
ggatcccaatggatactcatcacccctcacgatatcagtatggtgaagaacggggagagg
ataaagaagcagcaaatggcagctcctcgctcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (23)   

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