KEGG   Malus domestica (apple): 103440745
Entry
103440745         CDS       T03194                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE isoform X2
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103440745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mdm03036]
    103440745
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103440745
  Chromatin remodeling factors
   NuRD complex
    103440745
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like Chromo DUF1087 Helicase_C ResIII HDA2-3 PHD CHDCT2 Myb_DNA-binding zf-HC5HC2H DUF2703 C1_1 C1_2 PHD_4 zf-PHD-like
Other DBs
NCBI-GeneID: 103440745
NCBI-ProteinID: XP_008377664
Position
8:4678806..4694476
AA seq 1427 aa
MSSLVERLRVRSDRRPVYNIDESDDEADFVSGKRGTAPEKFEKIIRSDAKENSCQACGGS
GNLLDCETCSYAYHSKCLLPPLRSPPPGNWRCPECVSPLNDIDKILDCEMRPTVAGDSDA
STLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKAHPRLKTKVNNFHRQMESSNNS
EDDFVAIRPEWTTVDRILACREDDEKEYLVKWKELPYDECYWESESDIAAFQPEIGRFNR
IQSRSHKVLSSKQKSSLRDAMDSKYKQKEFQQYEGSPDFLSGGTLHPYQLEGLNFLRFSW
SKQTHVILADEMGLGKTIQSIAFLASLFEEKVSPHLVVAPLSTLRNWEREFATWAPQMNV
VMYVGSSQARAVIREYEFYFPKNHKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDS
TSLKPIKWECMIVDEGHRLKNKDSKLFSSLQQYWTNHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQEEFKDINQEEQVSRLHRMLAPHLLRRVKKDVMKELPPKKELILRVDLS
SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPFMLEGVEPDIEDPNEAFK
QLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTFKKWQYERIDGKVGGA
ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL
GQTNKVMIYRLVTRGSIEERMMEMTKKKMVLEHLVVGRLKKQDINQEELDDIIRYGSKEL
FVDENDEAGKSRQIHYDDAAIDRLLDRDQAGDDEALLDDEDEDGFLKAFKVANFEYIDEA
EAVAEEEPQKVTMESRPLASSYERTNYWEELLKDKYEVHKVEEFNALGKGKRSRKQMVSV
DDDDLAGLEDVSSDGEDDNYEAEVMDGETSSSGTVSGGKRLPNRKRSRVESMEPPPLMEG
EGRSFKVLGFNQSQRAMFVQVLMRGFFLVIRFSGMCRFGVGDYDWKEFTARMKKTFEEVD
RYAKLFLEHIAEGDNDSPTFADGVPKDGLRIGDVLIRVATLMLVKKRVEAALRNPGAPLF
SQDTLLFHPGLKGGKYWKEEHDFTLLRAVIKHGYGRWQAIVDDKDLRLQEVICQELNLPF
INLPLPGQVNTQAQNGEKATNGEGPSNHASENGSGSDIGANVSQGTSDAVNQPQLFHNSS
VLFQYRDMQRRQVEFIKKRVLLLEKGNVSELIAEEYGEATVVGSEEPESAPNATILSSPH
SVETNGHMVDQLPRIVDITPEEVAAAACDNDPDRLKLPRLYNEMCNVVERNAHISLETSL
GTICEAINMTLSSVPHHPPPESLILNPGKQSEAESSGGVFLKPPSPQGDGKHAVVADSEM
TNLAAEPEPTIMELDPEPVDGIICDDRGKQEQNNVDSKGKGVIVLDD
NT seq 4284 nt   +upstreamnt  +downstreamnt
atgagtagcctggtggagaggcttcgcgttaggtcagaccgaagaccggtgtacaacatt
gatgagtcagatgatgaggctgattttgtatctggaaaacgtgggacagctccggaaaag
tttgaaaagattattaggagtgacgcgaaagagaattcatgtcaagcctgtggcggaagt
gggaatcttctggactgtgaaacatgtagttatgcttaccattctaagtgtttacttcca
ccattgagatcgcctccccctggcaactggagatgccctgaatgtgtaagcccgttaaat
gatattgataagattttggactgtgaaatgcgccctactgtagctggtgatagtgatgcc
tcaacgctgggctcaaagcaaatttttgtaaaacaatatcttgtaaagtggaagggacta
tcttatctgcattgcacatgggttccagagaaggagtttgtgaaagcttttaaggcccat
ccacgtttgaagacaaaagtaaataatttccatcgtcaaatggaatcaagtaataactct
gaggatgattttgttgccattcgacctgaatggactactgttgatcgaattctggcttgc
agggaagacgatgagaaagaatatttagtaaagtggaaagaacttccctatgatgagtgc
tattgggaatccgaatcggacatagctgcatttcagccggaaatagggagattcaacaga
attcagtctaggtctcataaagttttgtctagtaagcagaagagcagtcttagagatgcc
atggactcaaaatataagcagaaagagtttcaacagtatgaaggcagtcccgactttctt
tctggaggcactctgcatccgtatcagcttgaagggttgaacttcttacgtttctcctgg
tccaaacaaactcatgttatacttgcagatgagatgggacttggtaaaaccatacagagt
attgcttttttagcatctctttttgaagagaaagtctctccacatctagttgtggctcca
ctttcaacattaagaaattgggaacgggaatttgcaacatgggcacctcaaatgaatgtg
gttatgtatgttggctcttcccaagcgcgtgctgtcatacgggaatatgaattttacttc
cccaaaaatcacaagaagataaagaaaaagaaatctggtcaaattgttagcgaaagcaag
caagataggatcaaatttgatgttctcttgacatcgtatgagatgatcaacttagactca
acgtcactaaaaccaataaagtgggagtgcatgattgttgatgaaggtcatcgtctaaaa
aataaggattcaaaattattctcatcattacagcagtattggactaatcatcgtgtgctt
ctgaccggcactcccctccagaacaatctggacgagctctttatgcttatgcatttcctt
gatgctgggaagttcggaagtctggaagagtttcaggaagagtttaaggatataaatcaa
gaggaacaagtttcacggcttcatagaatgttggctccccatctcctaagaagagtgaaa
aaggatgtgatgaaggaactacctcctaaaaaggaactgatattacgtgttgatttaagc
agcaaacagaaagagtattacaaagcaattctgacccgtaactatcagatactaactcgt
cgaggtggtgcacagatatctcttatcaatgtggttatggaattgcgcaagctttgttgt
catccgtttatgttagagggagttgaaccagacatagaagatccaaatgaagctttcaaa
cagctattggaaacttctgggaaattgcaattgttagacaaaatgatggtgaaacttaag
gagcaagggcatagagttctcatatattcacagtttcagcacatgcttgatttgctagaa
gactattgtactttcaaaaaatggcagtacgaacggatagatggaaaagttggtggagct
gagagacaaataagaatagatcgatttaatgccaaaaattcttctagattttgttttctg
ctatctactcgagctgggggcttaggaataaaccttgcaactgcagatacggtgatcata
tatgatagtgattggaatcctcatgctgatctacaagctatggcaagagctcatcgactt
gggcaaactaacaaggtaatgatttataggctagtaacccgaggaagcattgaagaacgg
atgatggaaatgacaaagaagaaaatggtattggagcatttggttgttggaaggttaaag
aaacaagatatcaaccaggaagagttagatgacatcataaggtatggatcgaaggagtta
tttgttgacgaaaatgatgaagcaggaaaatcccgtcaaatccattatgatgacgctgca
atagatagactactggatcgtgatcaagctggggatgatgaggctttgttggatgatgaa
gatgaagatggatttttaaaggccttcaaggttgcgaattttgaatatattgatgaagca
gaggctgtagcagaggaggaaccacaaaaggttaccatggaaagtcgacctcttgcgagc
agttatgaaagaacaaattactgggaagagttattaaaagacaaatatgaagtgcataaa
gttgaagaatttaatgctttgggaaaaggaaagcgaagtcgtaagcagatggtatctgtt
gatgatgacgatcttgctggtttggaagatgtgagttctgacggtgaagatgataactat
gaagctgaagtgatggatggtgaaacatcatcatccggaactgtttctggggggaagagg
ctgcctaacagaaagaggagccgtgtggaaagtatggagccccctcccttgatggaagga
gaaggaagatccttcaaagttttgggtttcaatcaaagtcagagagccatgtttgtacaa
gtcttgatgagggggttctttttggtgataagattctctggaatgtgcaggttcggagtg
ggggattatgactggaaagagtttacagcacgcatgaagaagacatttgaagaagtagat
agatatgctaaactattcttggagcacatagctgaaggagataatgactctccaaccttt
gcagatggtgtacctaaagacgggctcagaataggagatgtacttattagggttgcaact
ttgatgctggtgaagaaaagggtggaagcagcattaagaaatccaggggctccacttttt
tcacaggataccttgttgttccaccctggattgaagggtggaaagtattggaaggaggaa
catgatttcacattgctgcgtgccgtaattaagcatggatatggaagatggcaagctatt
gttgatgacaaggacctgaggcttcaagaagttatctgtcaagagttgaatctccccttt
ataaatttacccctccctggacaagttaatacacaagcacagaatggtgagaaagcaaca
aatggagaaggacctagcaaccatgctagtgaaaatggtagcggaagtgacataggagct
aatgtttcccagggaaccagtgatgccgtgaaccaacctcagttgtttcataactcttct
gtgttatttcaatatagagatatgcagagaaggcaggtagaatttattaagaagagggtg
cttcttttggagaaagggaacgtttcagagttgattgcagaggaatatggtgaagcaact
gtggttggaagtgaagaacctgagagtgcaccgaatgctacaatattgtcaagccctcat
tccgtggagactaatggtcacatggttgatcagttgcctagaatagtagacatcactccc
gaagaagttgctgctgcagcttgtgacaacgatccagatcgattgaaattgcctcgcctt
tataatgagatgtgcaacgtcgtggagcgaaatgcccatatttcacttgagacttcttta
ggaaccatttgtgaagcgataaacatgactctctcttctgtgccccatcatcctccacca
gaatctctcatattgaatccaggtaagcaatcggaagctgagtcaagcggcggtgttttt
ctgaaaccaccatctcctcaaggtgacggaaagcatgccgtcgtggcagactctgagatg
acaaatttggctgcagaacctgaacctacaatcatggagctagaccctgaacccgtggac
gggataatctgtgatgatcggggaaagcaagaacagaacaatgtcgattctaagggaaag
ggggtcattgtattggatgattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (16)   
   Pfam (16)   
All databases (32)   

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