KEGG   Malus domestica (apple): 103449351
Entry
103449351         CDS       T03194                                 
Name
(RefSeq) LOW QUALITY PROTEIN: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103449351
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103449351
   03016 Transfer RNA biogenesis [BR:mdm03016]
    103449351
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     103449351
Messenger RNA biogenesis [BR:mdm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     103449351
Transfer RNA biogenesis [BR:mdm03016]
 Prokaryotic type
  tRNA degradation factors
   103449351
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase
Other DBs
NCBI-GeneID: 103449351
NCBI-ProteinID: XP_008386883
Position
12:complement(1339590..1351725)
AA seq 916 aa
MLANPNSCRLHCPNPSQFLHPNRPKCFLIPNCPRSPCFSSKSKFCNLSLLLPRKTSKKGL
GIRALSEPGGVPSSGPQGYPQPYSVKIPVGDRHILVETGHIGRQASASVTVTDGETIVYT
SVCLADTPSEPSDFFPLSVHYQERFSAAGRTSGGFFKREGRAKDHEVLICRLIDRPLRPT
MLNGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPNSKTVAGVRIGLLGDKFI
VNPTTKEMEDSELDLLVAGTDTAILMIEGYCDFLTEEKLLQAVEVGQDAIRAICNEVEAL
VKKCGKPKMLDAIKLPPPELYNHVEEIAGDELVRALQIKGKIPRRKALLSLEGEVLSILT
EKGYVSKDAAPGGSETILDIFEDEEEDEEVVVDGEVDEGDVHIKPSSRKSTPLFFSEVDV
KLVFKEVTSKFXRRRIVEGGRRSDGRTPDEIRPINSKCGLLPRAHGSALFTRGETQSLAV
VTLGDKQMAQRLDNLVGDDEWKRFYLQYTFPPSCVGEVGRTGAPSRREIGHGMLAERALE
PILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKSSIVGIAMGMVLET
EEFGGNGAPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVSGITLPVMREALLQA
KDGRKHIIAEMLKCSPPPSRSLSMYAPLIHIMKVNPEKVNLIIGSGGKKVKSIIEESGVD
AIDTQDDGIVKITGRDLSSIEKSKAIITNLTMVPSVGDIFRNCEIKSIVPYGVFVEIAPG
REGLCHISELTSEWLAKAEDAVKVGDQIDVKLIEVNEKGQLRLSRKALLPDTGAENASAK
QSTADSNDVASQESSDKGSPKREELPQKKFIRRLVSTAKDRPNISKDKTKKSNSKVVGSV
SSTDENTLVNGEANIG
NT seq 2751 nt   +upstreamnt  +downstreamnt
atgttggcaaaccctaacagttgcaggctccactgccccaatccttcccaattcctgcat
ccaaacaggcccaaatgtttcctcatcccaaactgccctcgttccccctgcttctccagc
aagtccaagttctgcaatttgtccctgcttctgcccagaaagaccagcaagaaggggctt
ggcatcagagctttgtccgagcccggcggtgttccgtcgagcggtcctcagggctaccct
cagccgtactctgtcaaaatccctgttggtgatagacatattttggttgagacaggtcat
attgggagacaagccagtgcttctgttacagtgacagatggagaaaccattgtttataca
tctgtttgtctggccgacactccaagtgagccttcggacttcttccctctttcggtacat
tatcaggagcgcttttcagcagcaggtcgaactagtggaggctttttcaaacgagaagga
agggcgaaagatcatgaggttctcatatgtagattgattgataggcctttgcgtccaact
atgttgaatggcttctaccatgaaactcagatactctcttgggttctgagttatgatggt
ttgcattctcctgattctttggcagtcacagcagctgggatagcagtggctctttcagaa
gttccaaactcaaaaaccgtagcaggagtgcgaattggtcttctcggtgacaaatttatc
gtgaatccaacaacaaaggagatggaagactccgagttggacttgttggttgcaggcaca
gatactgcaatactgatgatagagggctattgtgattttctcacagaggaaaagttgctg
caagcagtagaagttgggcaggatgccatacgagcaatttgcaatgaggtagaagctttg
gttaagaagtgtggaaagccaaaaatgcttgatgcaatcaaattacctccccctgagcta
tataatcatgttgaggaaattgccggtgatgagttggtaagagctctgcagattaaggga
aagattcctagaaggaaagctctcttgtcattggaaggagaagttttatctatacttaca
gaaaagggatatgttagtaaggatgcagctcccggaggcagtgaaacgatactggatata
tttgaagatgaagaagaggatgaggaagtggttgtggatggtgaagtagatgagggtgat
gttcatataaagcctagttcacgaaagtcaacccccttgttcttttctgaggtagatgtg
aagctggtattcaaagaagttacatccaaatttntgcgaagacgcattgtggagggtggt
agaagaagtgatggacgtaccccagatgagatacgtccaattaattcaaaatgtggactg
cttccaagggcacatggaagtgctcttttcacacgtggggaaacacagtcattggctgtt
gttacactcggggataaacagatggcacagaggttagacaacctagtaggtgatgacgaa
tggaagagattctatctccagtacacatttcccccttcatgtgttggggaagttggacgg
actggagcccctagtagaagagaaattggccatggaatgcttgctgagagagctcttgaa
ccaattttgccttccgaagatgattttccttacactatacgtgttgagagtacaattact
gaaagcaatggctcttcaagtatggcatctgtttgtgggggctgcttagctttgcaggat
gctggggttccaatcaagtcctctatagttgggatagcaatgggtatggttttggaaact
gaggaatttgggggaaatggtgctccactaattctgtctgacataactggatctgaagat
gcatccggggatatggatttcaaggttgctggaaatgaagatggtgtaactgcatttcag
atggacataaaggtgagcgggattacattaccagttatgagagaggcactcctacaggca
aaggatggccggaagcatattattgcggaaatgttgaagtgctcacctcctccttcaaga
tcgctttctatgtatgcaccactgattcacataatgaaggtcaaccctgagaaagtaaac
ttaatcattggtagtggtgggaagaaggtgaagagtattatagaagagagtggagtagac
gcaattgacacacaagatgacgggattgtgaaaattactggcagggatttgtctagcata
gaaaagtctaaagctattattactaacttgacaatggttccgtcagttggcgatatcttc
aggaactgcgagatcaaatcaatagttccatatggagtattcgtggaaatagcacctggg
cgagagggactttgccatattagcgagttgacttcggagtggctggccaaggcagaagat
gctgttaaagttggagatcaaattgatgttaaacttattgaggtaaatgagaaggggcaa
cttcgccttagccgtaaagctctacttccagatacaggtgcagagaatgccagtgcaaag
cagtctacagctgactcgaatgatgtagcttctcaagaatcatctgacaagggttctcca
aagagggaagagctcccgcaaaagaagtttattcggagattagtcagcactgccaaagat
agaccaaatatcagcaaagacaagacaaagaagagcaacagtaaagtagtcggtagcgtc
tccagcacggacgaaaatactttagtgaatggagaggctaacatcggatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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