KEGG   Monodelphis domestica (gray short-tailed opossum): 100016063
Entry
100016063         CDS       T01031                                 
Symbol
RTCB
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
mdo  Monodelphis domestica (gray short-tailed opossum)
Brite
KEGG Orthology (KO) [BR:mdo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mdo03016]
    100016063 (RTCB)
Enzymes [BR:mdo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     100016063 (RTCB)
Transfer RNA biogenesis [BR:mdo03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    100016063 (RTCB)
 Prokaryotic type
   tRNA splicing ligases
    100016063 (RTCB)
SSDB
Motif
Pfam: RtcB Cu-oxidase_4
Other DBs
NCBI-GeneID: 100016063
NCBI-ProteinID: XP_001366104
Ensembl: ENSMODG00000001414
UniProt: F7BCY1
Position
8:complement(87193797..87211801)
AA seq 505 aa
MSRSYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagccgtagctacaatgacgagctgcagtacctggacaagatccacaagaactgctgg
aggatcaagaagggcttcgtgcctaacatgcaggtggaaggagtgttctatgtaaatgat
ccacttgagaaattaatgtttgaggagttaagaaatgcctgccgaggtgggggtgtcggt
ggcttcctgccagcaatgaaacagattggcaatgtggcagccctacctgggattgttcat
agatctattgggcttcctgatgtccattctggttatggattcgcaattgggaacatggct
gcttttgatatgagtgacccagaagctgtggtgtcaccaggtggtgtcggatttgatatc
aactgtggtgtccgattgctgagaaccaaccttgatgaaagtgatgtccagcctgtgaag
gaacaactagcccaggccatgtttgaccacattcctgttggggtgggatcaaaaggcgtt
atcccaatgaatgccaaggacttggaggaggctctggagatgggggtggactggtctcta
cgagaagggtatgcctgggctgaggataaggagcattgtgaggaatatgggcgtatgctg
caagctgaccccaataaggtctcagccagggctaaaaagagaggccttcctcagcttggg
accctgggagcaggaaatcattatgctgaaatccaagttgtggatgatatttataatgag
tacgctgccaagaagatgggcattgaccacaagggacaggtgtgtgtgatgatccacagt
ggcagcagaggcctgggccatcaagtagctacagatgcactggtagcgatggaaaaagct
atgaagagagacaagattattgtcaatgaccgtcagttagcatgcgcgaggatcagctcc
ccagaggggcaggattacctaaaggggatggctgctgccggaaactacgcctgggtcaac
cggtcctccatgacattcttgacccgacaggcttttgccaaggttttcaacacaactcct
gatgacctggacctccacgtgatctatgacgtctcccacaacatcgccaaggtggaacag
catgtggtggatgggaaagagcggacattgttggtgcacaggaagggctccacccgggcc
ttccccccacaccatcccctcattgctgtggattaccagctcactggacagccagtcctc
attgggggaaccatgggaacctgtagctatgtccttactgggactgagcagggcatgact
gagacctttggaacaacctgccatggagcaggtcgtgcattgtcccgagcaaaatctcga
cgtaacttagacttccaggatgttctagataaattggctgacatgggcatcgccatcagg
gttgcttcccctaaattggtgatggaggaggctccagaatcctataaaaacgtgacagat
gtggtgaatacttgccatgatgctggaatcagcaagaaggccatcaaactcagaccaatt
gcagttatcaaaggctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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