KEGG   Monodelphis domestica (gray short-tailed opossum): 100019289
Entry
100019289         CDS       T01031                                 
Symbol
DICER1
Name
(RefSeq) dicer 1, ribonuclease III
  KO
K11592  endoribonuclease Dicer [EC:3.1.26.-]
Organism
mdo  Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:mdo00001]
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    100019289 (DICER1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mdo03036]
    100019289 (DICER1)
Chromosome and associated proteins [BR:mdo03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    100019289 (DICER1)
   microRNA pathway
    RISC loading complex
     100019289 (DICER1)
SSDB
Motif
Pfam: Dicer_platform Dicer_dsRBD Ribonuclease_3 Dicer_PBD Ribonucleas_3_3 Dicer_dimer PAZ ResIII DEAD Helicase_C SLFN-g3_helicase
Other DBs
NCBI-GeneID: 100019289
NCBI-ProteinID: XP_001367933
Ensembl: ENSMODG00000012624
Position
1:327299619..327426711
AA seq 1923 aa
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGNFNRNGKRTVFLVNSANQVAQQASAVRTHSDLK
VGEYSSLEISASWTKEKWNQEFIKHQVLVMTCQVALNVLKNDYLSLSNINLLVFDECHLA
ILDHPYREIMKICEDCPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDTSGLYERLLKELDEALNFLNDCNISVHSKEKDSILISK
QILSDCRAVLVVLGPWCTDKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
MEYRSYVQSKGRARAPISNYIMLADSDKIKSFEDDLKTYKAIEKILRNKCSKSVDTGETE
TEPIVDDDDIFPPYVLRPDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
GTFYSTLYLPINSPLRAAIVGPQMNCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRNSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVNDSSTLDIDFKFMDDI
EKSEARIGIPSTQYTKETPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISIPNSSLAESENYCKHSTIVVPENAAHQGANR
TSSVENHDQMSVTCRSLFSESPSKIQIEVSTELTAINGISYNKNLANGSYDLVNRDFCQG
NQLNYYRQEIPVQPTTSYPIQNLYNSENQPKPNNECTLLSNKYLDGNANKSTSDGCPTKA
VTATTSTSEISIASKGRIDSEQNPSNGYSSKTLGPNPGLILQALTLSNASDGFNLERLEM
LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPP
VNWLPPGYIVNQDKSNTDKWEKDEMTKDNMLANGKLDEDYDEEEDEDLMWRVPKEEVDYE
DDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSTNDSNYEWKMPKKSSLGNMPFSSDID
DFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGIDTGKQSISYDLHTEQCIADKSI
ADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRSDWETTLYPSKDNFNSQQKNLSV
NYASISVANLQSSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYNFKN
KAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSAL
VNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKE
EDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLE
MEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQV
PNS
NT seq 5772 nt   +upstreamnt  +downstreamnt
atgaaaagccctgctttgcaatccctcagcatggcaggactgcagctcatgacccctgct
tcctcaccaatgggtcctttttttggactaccatggcaacaagaagcaattcacgataac
atttacaccccaagaaaatatcaggttgaactgcttgaagcagctctggatcataataca
atagtctgtttaaacactggctcagggaagacatttattgcagtactactcactaaagag
ctgtcctatcagatcaggggaaatttcaacagaaatggaaaaaggacggtgttcttggtc
aactctgcaaaccaagttgctcagcaagcatcagctgtcagaacacattcagatctcaag
gttggagaatattcaagcttagaaataagtgcatcctggacaaaggagaaatggaaccaa
gagtttattaaacatcaggttctggttatgacctgccaagtcgccttgaatgttttaaaa
aatgattacttatctctgtccaacattaacttgttggtatttgatgagtgtcatcttgca
atcctggaccatccctatcgagaaattatgaagatctgtgaagattgtccatcatgtccg
cgaattttgggattaactgcttctattttgaatgggaagtgtgatcctgcagaattggag
gagaagatacaaaaactggagaaaatccttaagagtaatgctgaaactgcaactgatttg
gtagtcttagacagatatacttctcagccatgtgagattgtggtagattgtggaccatat
actgatactagtgggctctatgaaaggctgctaaaggaattggatgaagcacttaatttt
ctaaatgactgcaacatatctgtgcattcaaaagaaaaggattctatattaatttctaaa
cagattctttcagactgccgagcagtattggtggttctgggaccctggtgtacagataag
gtagctggaatgatggtaagagaacttcagaaatatatcaaacatgagcaagaggagctg
cacaggaaatttttattgtttacagacacttttctaaggaaaatacatgcactctgtgaa
gagcacttctcacctgcctcacttgacctgaaatttgtaaccccgaaagtaataaaactg
cttgaaattttacgtaaatataaaccatatgaacggcagcaatttgagagcgttgaatgg
tataataataggaatcaagataattatgtgtcttggagtgattctgaagatgatgatgag
gatgaagaaattgaagaaaaagagaagccagagacaaattttccctctccatttaccaat
atcttatgtggaattatttttgtggagagaagatatacagcagttgttttaaacagattg
ataaaggaagctggcaagcaagatccagaactggcttatattagcagcaactttataact
ggacatggcattggaaagaatcaacctcgtaataaacagatggaagtggagttcagaaaa
caggaagaggtacttagaaaatttagggcacatgagaccaacctacttattgcaactagt
attgtagaagagggtgttgacataccaaaatgcaacctggtggttcgttttgatttgcct
atggaatatcgatcttatgtacagtccaagggaagagcaagggcacccatctctaattat
atcatgttagctgattcagacaaaataaaaagttttgaagatgatcttaaaacttacaaa
gctattgaaaagatcttaagaaacaaatgttccaaatcagttgatactggtgagactgaa
actgaacctattgtggatgatgatgatattttcccaccctatgttttgaggccagatgat
ggaagtccaagagttacaattaatacagccattggacacatcaatagatactgtgcaaga
ttaccaagtgatccgtttactcatctagctcctaaatgtaagacccgagaattgccagac
ggtacattttactcaactctctatctgccaattaactcgcctctccgtgctgccattgtt
ggtccacaaatgaattgtgcaagactggctgaaagagttgtagctcttatttgctgtgaa
aaactgcacaaaattggtgaactagatgatcatttgatgccagttggaaaagagactgtt
aaatatgaggaagagcttgatttacatgatgaagaagaaaccagcgttccaggccgacca
ggctccacaaaacgaaggcagtgttatccaaaagcaattccagaatgtttgaggaatagt
tatcctaaacctgatcagccctgttacttatatgtaatcggcatggtattaactactcct
ttacctgatgaacttaactttaggagacgaaagctttatcctccagaggatactacaaga
tgctttggaatactgacagccaaacctatacctcagattcctcactttcctgtgtataca
cgctctggagaggttactatatctattgagttgaagaagtctggtttcactttgtcctta
caaatgcttgagctgatcacaagacttcaccagtacattttctcacatattcttcggctt
gaaaaacctgcactagaattcaaacccacagaagctgattcagcctactgtgttctacct
cttaatgttgttaatgactccagcactttggacattgactttaagttcatggatgatatt
gaaaaatctgaagctcgtataggcattcccagtactcagtatacaaaagaaacacctttt
attttcaaactagaagattaccaggatgcagttatcattccaaggtatcggaactttgat
cagcctcatcgattttatgttgctgatgtatatactgatcttacaccactcagtaaattc
ccatcccctgaatatgaaacttttgcagaatattataaaacaaagtacaatcttgacctg
accaatctaaaccagccactgctggatgtggaccatacatcttcaagacttaatctattg
actcctcgacatttaaatcagaaggggaaagcccttccactaagtagtgctgaaaaaagg
aaagccaaatgggaaagtctacaaaataaacagatattggttccagagctctgtgcaatt
catccaattccagcatcattatggagaaaagcagtttgtctccctagcatactttatcgc
ctgcactgccttttgacagcagaggaactaagagcccagacagccactgatgctggtgta
ggggtcaaatcactccctgctgatttcagatatcctaacttggactttggatggaaaaaa
tctattgacagtaaatctttcatctcaattcctaactcctctttagctgaaagtgaaaat
tattgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggcgctaataga
acctcctctgtagaaaatcatgaccagatgtctgtgacctgcagatcattattcagtgag
tcacccagtaagatccaaattgaagtttccacagaactcacagcaattaatggtatttca
tacaataaaaatcttgccaatggcagttatgatttagtcaatagagacttttgccaagga
aatcagctaaattactataggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaatagtgagaaccagcccaaacccaacaatgaatgtactctgctgagt
aataaatatcttgatggaaatgctaacaaatctacctcagatggatgccccacaaaggca
gtgacagcgaccaccagtacttcagaaatttctattgcttcaaaagggagaattgattct
gaacaaaacccttccaatggatactcctcgaaaacccttggcccaaatcccggactcatt
cttcaggctctgaccctttctaatgctagtgatggatttaacttggaacgacttgaaatg
cttggggactcctttttaaagcatgcaatcaccacatatctgttttgcacttatcctgat
gctcatgagggccgcctttcttatatgagaagtaaaaaggtcagcaactgtaatctctat
cgccttgggaaaaagaaaggtctgcccagtcgcatggtagtgtcaatttttgatccccct
gtaaattggcttcctcctggttacatagtaaatcaagacaaaagtaacacagataaatgg
gaaaaagatgaaatgacaaaagacaatatgttggcaaatggtaaactggatgaagattat
gatgaggaagaagatgaagaccttatgtggagggttccaaaggaggaagtggattatgaa
gatgattttttggagtatgatcaggaacatattaaatttatagataacatgttaatggga
tcaggggcttttgtgaagaaaatttctctttctccgttttcaaccaatgattcaaattat
gaatggaaaatgcccaaaaaatcgtccctaggtaatatgccattttcatctgatattgat
gattttgattatagctcttgggatgcaatgtgttatttggatcctagcaaagctgttgaa
gaggatgattttgtagtagggttctggaatccatcagaagaaaattgtggcatcgacaca
gggaaacagtcaatttcttatgacttgcatacagagcagtgtattgctgataaaagcatt
gcagactgtgtggaagctctactaggctgctatttaaccagctgtggtgagagagctgct
caacttttcctctgttctttggggctcaaggtgctcccagtaattaaaaggagtgattgg
gagaccacgttataccccagcaaggataatttcaacagtcagcaaaagaatctttcggtg
aactatgcttctatctctgtagccaatttacagtcttctttatataaagacttagaatat
ggctgtttgaagattccaccaaggtgcatgtttgatcatccagatgctgaaaaaacactg
aaccaccttatatcaggctttgaaaattttgaaaagaaaattaactacaacttcaagaat
aaagcttaccttctacaggcatttactcatgcctcctaccactacaataccatcactgat
tgttatcagcgcttggaattcctgggagatgcaattttggactacctcataactaagcac
ctttatgaagacccacggcagcactccccaggagttctaactgacctacgatctgctctt
gtcaataataccatctttgcatcattagctgttaagtatgactaccacaagtacttcaaa
gctgtttctcccgaactattccatgttattgatgattttgtgcagtttcaacttgagaag
aatgaaatgcaaggaatggattctgagcttagacgatctgaggaggatgaagaaaaagaa
gaagatatagaagtaccgaaggccatgggagatatatttgaatcacttgctggtgccatt
tatatggatagtggaatgtcattggaaatggtttggcaagtctactatccgatgatgcga
ccattaatagaaaaattttctgcaaatgtgccccgttctcctgttcgagaattgcttgaa
atggaaccagaaactgccaaatttagccctgcagagagaacctatgatgggaaggtccga
gtaactgtggaagtggtagggaagggaaagtttaaaggcgttggccgaagctacaggatt
gccaaatctgcagctgcaaggagagcactacgaagcctcaaagcaaatcaacctcaggtt
cccaacagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (11)   
   Pfam (11)   
All databases (53)   

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