KEGG   Mycolicibacterium doricum: MDOR_06070
Entry
MDOR_06070        CDS       T06662                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mdr  Mycolicibacterium doricum
Pathway
mdr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mdr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MDOR_06070 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdr03021]
    MDOR_06070 (rpoC)
   03400 DNA repair and recombination proteins [BR:mdr03400]
    MDOR_06070 (rpoC)
Enzymes [BR:mdr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MDOR_06070 (rpoC)
Transcription machinery [BR:mdr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MDOR_06070 (rpoC)
DNA repair and recombination proteins [BR:mdr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MDOR_06070 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: BBZ06438
UniProt: A0A1X1SZV5
Position
598214..602191
AA seq 1325 aa
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQSNANSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR
APSTDQPESGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAQLFPSDGESAGG
WRPGDAWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDK
LKDAGFYWATRSGVTVSMADVLVPPQKQEILDRYEKEADGIERKYQRGALNHKERNDSLV
KIWQDATEEVGKALEEHYPSDNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP
IKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETER
GINVTLAERAATLDGGAALIRDPHVETSAFARTLATDAVDADGNVVIQRGHDLGDPAIDK
LLASGIDHVKVRSVLTCASASGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLT
MRTFHQGGVGEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDG
GEEVVYDKLSKRQRLRVIKHEDGTEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQ
IHLVHEVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENR
RVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKEN
VIIGKLIPAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYG
YSDYR
NT seq 3978 nt   +upstreamnt  +downstreamnt
gtgctagacgtcaacttcttcgatgagctccggatcggcctcgccaccgccgacgacatt
cgtcagtggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggatggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcaccc
gtcacgcatatctggtacttcaagggtgtcccgtcgcgcttgggctacctgctcgacctg
gccccgaaggatctcgagaagatcatctacttcgcggcctacgtcatcaccgacgtcaac
gacgagatgcgccacaacgagctctcgacgctggaggccgagatggtcgtcgagcgcaag
gccgtcgaggatcagcgcgacgccgacctggaggcccgggcccagaagctcgaagccgac
ctggccgagctcgaggccgaaggcgccaagagcgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgggagatgcgccagctccgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggacaaccttcaccaagctggcccccaagcagctcatcgtcgacgaggtgctc
taccgcgaactcgtcgaccgctacggcgagtacttcaccggcgccatgggcgcggagtcg
atcaagaagctcatcgagaacttcgacatcgaggccgaggccgagaacctgcgcgagacc
atccgcagtggcaagggtcagaagaagctccgcgcgctcaagcggctcaaggtcgtcgcg
gcgttccagagcaacgccaactcgcccatgggcatggtgctcgacgccgttccggtgatc
ccgccggaactgcgcccgatggttcagctcgacggtggccggttcgccacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgctccaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccggcccgtcaccgggcccggcaaccgtccgctgaag
tcgctgagcgacctgctcaagggcaagcagggccggttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgctccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaaactgatggcgctcgagctgttcaagccgttcgtgatgaagcgactg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccgcaggtgtgggacgtcctcgaagaggtcatctccgagcacccggtgctgctgaaccgc
gcaccaacgctgcaccgcctcggtatccaggccttcgagccccagctggtggagggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggcgaccag
atggccgtgcaccttccgctgagcgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggtaagccgctggccatgccgcgtctggac
atggtcaccgggctctacttcctgacgacgatgatcgagggcgacaagggcgagtaccgg
gccccgtccaccgatcagccggagtcgggcgtgtacagctcgcccgccgaggcgatcatg
gcgatggaccgcggtgcgttgagcgtgcgcgcgaagatcaaggtgcggctgacccagctg
cggccgccggccgccctggaggcccagctgttccccagcgacggggaatcggcgggcggg
tggcgcccgggcgacgcctggaccgccgaaaccacgctcggtcgggtgatgttcaacgag
ctgctgccgatctcgtatccgttcatcaacgagcagatgcacaagaaggtgcaggcccgg
atcatcaacgacctggccgagcgcttcccgatgatcgtcgtcgcgcagaccgtggacaag
ctcaaggacgccggcttctactgggccacccgttcgggtgtcaccgtgtcgatggctgat
gtgttggttccaccgcagaagcaggagatcctcgaccggtacgagaaggaagccgacggg
atcgagcgcaagtaccagcgtggcgccctcaaccacaaggagcgcaacgactcgctggtc
aagatctggcaggacgccaccgaagaggtcggtaaggccttggaggagcactacccatcg
gacaacccgatcatcacgatcgtgaagtcgggcgccacgggtaacttcacccagaccagg
acgctggccggcatgaagggtctggtgaccaacccgaagggtgagttcatcccgcggccg
atcaagtcctcgttccgcgagggcctgacggtgctggagtacttcatcaacacccacggc
gcccgtaagggtttggcggacaccgctcttcgcaccgccgactcgggttacctgacccgt
cgtctggtcgacgtcagccaggacgtcatcgtccgcgagcacgactgcgagaccgagcgt
ggcatcaacgtcacgctggccgagcgggctgccacgctcgatggtggggcggcgctgatc
cgcgatccgcacgtcgagacctcggcgttcgcccgcaccctggccaccgacgcggtggac
gccgacggcaacgtcgtcatccagcgtgggcacgacctgggcgacccggccatcgacaag
ctgttggcgtccggtatcgaccacgtcaaggtgcgttcggtgctgacctgtgcgtcggcc
tccggcgtgtgcgccatgtgctacggccgttcgatggcgaccggcaagctggtcgacatc
ggcgaggccgtaggcatcgtggccgcgcagtccatcggcgagccaggcacccagctgacc
atgcgcaccttccaccagggtggtgtgggtgaggacatcaccggtggtctgccccgcgtg
caggagctgttcgaggcccgcgtgccgcgtaacaaggcgccgatcgccgacgtctccggc
cgggtgcagctcgaggagggtgagcgcttctacaagatcaccatcgtcccggacgacggt
ggcgaggaagtggtctacgacaagctctccaagcgtcagcggctgcgcgtgatcaagcac
gaggacggcaccgaaggcgtgctgtccgacggcgatcacgtcgaggtcggcgaccagctc
atggagggttcggccgatccgcacgaggtcctgcgggtgcagggtccgcgtgaggtgcag
atccacctggtccacgaggtccaggaggtctaccgggcccagggtgtgtcgatccacgac
aagcacatcgaggtcatcgtccggcagatgctgcgtcgcgtcacgatcatcgattcgggt
gcgacggagttcctgcccggctcgctgaccgagcgtgcggagttcgagtcggagaaccgt
cgcgtcgtcgcggaaggtggcgagcccgccgccggccgcccggtgctgatgggtatcacg
aaggcgtcgctggccaccgattcgtggctgtcggcggcgtcgttccaggagaccacccgc
gtgctgaccgatgcggcgatcaactgccgcagcgacaagctgcagggtctgaaggagaac
gtgatcatcggcaagctgatcccggccggtaccggtatcaaccgctaccgcaacatccag
gtgcagcccaccgaagaggcgcgggccgcggcgtacacgatcccgtcgtacgaggatcag
tactacagccccgacttcggccaggcgaccggcgctgcggtgccgctggacgactacggg
tacagcgactaccgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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