KEGG T00943: Msip34

Methylovorus glucosetrophus: Msip34_0407

Entry

Msip34_0407       CDS       T00943

Name

(GenBank) DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

mei Methylovorus glucosetrophus

Brite

KEGG Orthology (KO) [BR:mei00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mei03032]
    Msip34_0407
   03400 DNA repair and recombination proteins [BR:mei03400]
    Msip34_0407
Enzymes [BR:mei01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Msip34_0407
DNA replication proteins [BR:mei03032]
Prokaryotic type
  DNA Topoisomerases
   Msip34_0407
DNA repair and recombination proteins [BR:mei03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Msip34_0407

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact

Other DBs

NCBI-ProteinID:

ACT49655

UniProt:

C6X935

Position

complement(420718..421842)

AA seq 374 aa
MPDTPLDECTVQLNDALGAELHGDMALSAEAARLRYVNDGTPGFARKRTAKGFRYVDRQG
RPLHEKTHLARIRALAIPPAWQDVWICPYANGHIQATGVDAKGRKQYRYHKEWRAIRDEA
KYAHMLDFALHLPLIREQVDADLARPGLCREKVLALVIALLEKTMIRVGNDEYARTNRSF
GLTTLRNRHVDVQGGRIAFHFRGKSRVEHAIELQNARLARLVRKMKDLPGQALFQYVDDA
GERHAVSSSDVNAYLKSITGRDYTAKDFRTWSGTLHTFQSLTTLDAFENQTQAKKNVVQA
ITEAARKLGNTPTICRKCYVHPLIIETYMAGKLLEAVEQETTDKDAPWALDAIERHVLHL
LQRQIADARKSEAA

NT seq 1125 nt +upstreamnt +downstreamnt
atgcccgataccccgcttgatgaatgtacggtacagctcaacgacgcccttggcgccgaa
ttgcatggcgacatggcgctctctgccgaagctgcgcggctgcgttatgtgaatgacggc
acgcccggctttgcccgcaagcgcacggccaagggctttcgttatgtggatcggcaaggc
cgccccttgcatgaaaaaacgcatctggcgcgcatccgggcgcttgccattccgcccgcc
tggcaagacgtgtggatatgtccgtatgccaatgggcacatacaagccaccggggtagat
gccaaaggtcgcaagcagtaccgctaccacaaggagtggcgcgccatccgcgatgaagcc
aaatacgcgcacatgctggatttcgccctgcatctgccgctgatacgcgaacaggtagat
gccgaccttgccaggcccgggttgtgccgggagaaagtgctggcgctggtcatcgccctg
ctggaaaaaaccatgatacgggtcgggaatgatgaatacgcccgcaccaatcgctccttt
ggcctcaccaccctgcgcaaccgccatgtggatgtacaaggcggccgcatcgcctttcac
ttccgtggcaaaagccgggtggaacatgccatcgaattgcagaacgccaggctcgccaga
ctggtgcgcaagatgaaagacctgcccgggcaagcgctgtttcagtatgtggatgacgcc
ggtgaacgccatgcggtgagttcatcggacgtgaatgcctatctcaaaagcatcaccggt
cgcgactataccgccaaggatttcagaacctggtctggcaccttgcatacctttcaatcg
ctcaccacgctggatgcctttgaaaaccagacccaggccaaaaagaatgtggtgcaggcc
atcaccgaagccgcccgcaagctgggcaatacccccaccatctgccgcaagtgttatgtg
cacccgctgattatcgaaacctatatggcggggaaattactggaggccgtagagcaggaa
actacggataaggatgcaccatgggcgctggatgccattgagcggcatgtgctgcatttg
ctgcaacggcagatagccgatgcacgaaaaagcgaagcggcctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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