KEGG   Chelativorans sp. BNC1: Meso_1121
Entry
Meso_1121         CDS       T00374                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
mes  Chelativorans sp. BNC1
Brite
KEGG Orthology (KO) [BR:mes00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mes03016]
    Meso_1121
Enzymes [BR:mes01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     Meso_1121
Transfer RNA biogenesis [BR:mes03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Meso_1121
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: ABG62517
UniProt: Q11JA8
Position
complement(1226020..1227198)
AA seq 392 aa
MDLIKSRSELENAVAALENSDFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLADGM
DLAPFFRLMGNEQVVKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVCGFGDSISYDQL
VLRITGEHIDKTSRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQRGGREGWLKE
EMDVLTARETYDPHPDDAWKRLKMRARKPVELAILQRIAAWREREARERNVPRGRIMKDD
ALYEVAQQQPRDIAALSRLRAVPRGWERSGSAAALLKAVNDALALPKEALPKLPRPHHAP
EGAAAAAELIKVLLKLVAEKEGVAPKMLASTDDIEKIAAEGEKAQVPALHGWRREVFGEE
ALKLLRGEIALRFANRRIETFAPADQMRSAAE
NT seq 1179 nt   +upstreamnt  +downstreamnt
atggacctgatcaaatcgcgctcagagctggaaaatgcggtcgccgcgctcgagaactcc
gatttcgtcactgttgacactgagttcatccgcgaaaccacattctggccggagctgtgc
ctcatccaaatggccgcccccggtgtcacggcgctggtggatccgctagccgatggaatg
gatcttgccccgttcttccgtctcatggggaacgagcaggtcgtcaaagttttccacgcc
gcgcggcaggatatcgaaatcatctacaatcgcggcggcctcattccccaccccatcttc
gacacgcaggttgccgcaatggtgtgcgggttcggggacagcatctcctacgaccaactc
gtgctcaggatcactggcgagcacatcgacaagacgtcccgcttcaccgattggcggcac
cggcccctgtcggagaaacagcttcgctacgccctggcggatgtcacgcatctcatccct
gtttatgcgcatctgacaaccgagctccagcgcggagggcgcgaggggtggctgaaggag
gagatggatgtcctgacggcgcgggagacctatgacccgcacccggacgacgcctggaaa
cggctcaagatgcgcgcgcgcaagcccgtcgaactggctatcctccagcgcatcgccgcc
tggcgcgagcgcgaagcacgtgagcgcaacgtgccgcgcggccgcattatgaaggacgat
gccctctacgaggtggcccagcagcagcctcgggacatcgcggccttgagtcgccttaga
gcggttcccaggggctgggaacgttcgggctctgcagccgccttgctcaaagcggtgaac
gacgcgctggcgctgccgaaggaggcactgccaaaactgccgaggccgcatcacgcgccg
gagggagcagcggccgcggcggagctcatcaaggtgctgctcaagctcgtggcggagaag
gaaggcgtggctcccaaaatgctcgcttccaccgacgacatcgaaaagatcgcggctgaa
ggcgagaaggcccaggttccggcgcttcatggctggcgccgcgaggttttcggcgaagag
gcgctcaagctcctgcgcggggagatcgcactgcgcttcgccaaccgtcgcattgaaacc
ttcgcgcccgcggaccagatgcgcagcgcggcggaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system