KEGG   Chelativorans sp. BNC1: Meso_1353
Entry
Meso_1353         CDS       T00374                                 
Name
(GenBank) RNAse R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mes  Chelativorans sp. BNC1
Pathway
mes03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mes00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Meso_1353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mes03019]
    Meso_1353
   03016 Transfer RNA biogenesis [BR:mes03016]
    Meso_1353
Enzymes [BR:mes01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Meso_1353
Messenger RNA biogenesis [BR:mes03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Meso_1353
Transfer RNA biogenesis [BR:mes03016]
 Prokaryotic type
  tRNA degradation factors
   Meso_1353
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ABG62749
UniProt: Q11IM6
Position
complement(1443793..1446090)
AA seq 765 aa
MARKNSKAAGGEGASANPHLPSREEILRFVSENPDQAGKREIAKAFSLKGGDRIWLKEML
RDMQNDGLLKQKRRRLSRPGSLPPMVVLDIFSRDAEGGLLARPAELEDEDGPIPLVSIRP
QRGGRSPAAGVGDRVLARVFASKEEGGPAYTGRVVKLFEKRRRAVLGVFREMPDGTLRIE
PVERRQPELVVDEASRKGAKSGDLVEVEPLSQGRYGLPRARVLEVVGSITTEKAVSMIAI
HAHEIPHIFPESVVKEAESVKPATLEGREDWRKLPLVTIDPADAKDHDDAVYAEADTDEK
NPGGVVVTVAIADVACYVRPDSALDREALNRGNSVYFPDRVVPMLPERISNDLCSLREGE
ARPALAVRMRFTSGGRKIGHSFHRVMMRSAARLSYEQAQAAIDGRPDDKTGPLLEPVLRP
LWNAYSVLKRGREAREPLELDLPERKIILKPDGTVDRVVVPPRLDAHKLIEEFMIQANVA
AAETLESVRQPLVYRVHDAPSLAKQESLREFLGSLEISLAHGAALRPAQFNRILAHVAGT
EQEQLVNEVVLRSQSQAIYARENIGHFGLNLRRYAHFTSPIRRYADLIVHRALITAMNFG
PDGLREADEERLEEVSALISATERRAMAAERETVDRLIAEHLAGRINEEFSARISGVTKA
GLFVLLPQYGADGFVPVSSLGDDYYIFDEVRHALVGQRSGCGYQLGDSVDVRLLEVAPLA
GAMRFEVLTSPTRLPGSSKSFHKARRGSARNQKRPSRSTVRGRRR
NT seq 2298 nt   +upstreamnt  +downstreamnt
ttggcgcgcaagaactcgaaagcggcaggaggggaaggtgcttccgccaatcctcacctg
ccttcgcgcgaagagatcctgcgcttcgtcagcgaaaatcccgaccaggccggaaagcgc
gagatcgccaaggcattttcgctgaagggcggcgaccgcatctggctaaaggagatgctg
agggacatgcaaaatgacgggcttctgaaacagaagcgccgtcggctctcccggccgggc
tcccttcccccgatggtcgtcctcgacattttctcgcgggatgcggaaggagggctcctg
gcgcggccggctgaactggaggatgaggacggtcccatcccgctcgtttccatccgcccg
cagcggggcggccgctcccccgcagccggcgtgggcgaccgtgtgctcgcccgcgtgttt
gcgagcaaggaggaaggcggcccggcctataccggccgggtggtcaagcttttcgaaaag
cgccggcgggcagtgctcggggtcttccgtgaaatgcctgatggtaccctccgcatagag
ccggtggagcgccgccagcccgagctggtcgtggatgaggcttcccgcaagggcgcgaaa
agtggcgatctcgtagaggtggagccgctatcgcaagggcgctacggcctgccgcgcgcg
agggtgctggaggtggtggggtcaatcacgacggaaaaggcggtctcgatgatcgccatc
catgcccacgagatcccccacatttttccggaaagcgtggtgaaagaggccgaaagcgtc
aagccggccacgcttgaaggacgtgaggattggcgcaagctgccgcttgtgaccatcgat
ccggccgacgccaaggaccatgacgatgcggtctatgccgaggccgacacggatgagaag
aatccgggcggcgtggtggtaaccgtcgcgatcgccgacgttgcctgctatgtgcggccc
gactccgcgctcgaccgcgaggcgcttaacaggggaaattcggtttatttccccgaccgc
gtcgtgccgatgctgcccgagcgcatatcgaacgacctgtgctcgctgcgcgaaggggaa
gccaggcccgcgcttgccgtgcgcatgcgctttacctcgggcggccgcaagatcgggcac
tcttttcatcgtgtcatgatgcgctccgcggcgcgcctttcctacgaacaggcccaggcg
gcgatcgacggacggccggatgacaagacagggccgctgcttgaaccggtgcttcgcccg
ctctggaatgcctattcggtgctcaagcgcggcagggaagcgcgcgagccgctggaactg
gacctgcctgaacggaaaatcatcctgaagcccgatggcacggtggatcgcgtggtggtg
ccgccgcgcctcgatgcgcacaagctcatcgaagagttcatgatccaggcgaatgtggcg
gcggctgaaacactggaatcggtccgccagccgctcgtctaccgcgttcacgacgcccct
tcccttgcaaagcaggaatcgctgcgcgagttccttggctccctggaaatctcgctggcg
catggagcggcgttgaggccggcgcagttcaaccgcatcctcgcgcatgtggcgggcact
gagcaggagcagctcgtcaacgaggtggtgctgcgctcgcaaagccaggcgatctatgcc
cgcgagaatatcggccatttcgggctcaacctgcgccgctatgcgcatttcacctcgccg
atccgccgttacgcggacctcatcgtgcatcgggctttgatcacggcgatgaatttcggg
ccggacggcttgagggaggcggacgaggagcggctggaggaagtttccgctctcatctcg
gcgaccgaacgacgcgccatggcagccgagcgggagacggtggaccgccttatcgccgag
catctggcgggccgcatcaacgaggaattttccgcgcggatttcgggcgtcaccaaggcc
gggctcttcgtgctcctgcctcaatacggcgcggacggcttcgttcccgtttcgtcgctg
ggggacgactactatatctttgacgaggtgcgccatgcgctcgtcgggcagcgcagtggg
tgcggctatcagctcggcgacagcgtggatgttcgtctgctagaagtagcaccgcttgcg
ggtgccatgcgctttgaagtcctgaccagccccacccgcctgcccggttcctccaaatct
ttccataaggcgagacgcggatcggcccggaaccagaaacgcccaagccgctccacggtt
aggggcaggagacgatga

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