KEGG   Manihot esculenta (cassava): 110599827
Entry
110599827         CDS       T05761                                 
Name
(RefSeq) THO complex subunit 4D isoform X1
  KO
K12881  THO complex subunit 4
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03013  Nucleocytoplasmic transport
mesc03015  mRNA surveillance pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110599827
  09122 Translation
   03013 Nucleocytoplasmic transport
    110599827
   03015 mRNA surveillance pathway
    110599827
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110599827
   03041 Spliceosome [BR:mesc03041]
    110599827
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110599827
    TREX complex
     110599827
Spliceosome [BR:mesc03041]
 Complex C
  Other components
   EJC/TREX
    110599827
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110599827
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 110599827
NCBI-ProteinID: XP_021592102
Position
1:31499365..31502706
AA seq 265 aa
MATSVDMSLDDIIKRNRERGRGRGRPRRGRGPGGPPNGGRMAGAIRKGPLSVNARPSQYT
IAKPPRRIRSLPWQYDLLEDSIRAAGITGAEGGAKLYVSNLDYGVSNEDIRELFSEIGGL
KRYAVHYDKNGRPSGSAEVVYTRRSDAFAAFKKYNNVLLDGKPMKIEIMGTSAEMPFSAR
VNVTGINGRRKRTVVMTPGPGRTRGTAPPTNHGSSQNRRGALRSGRGRGRGSGRGRGRGR
KQPFLKSADELDKELENYHADATQT
NT seq 798 nt   +upstreamnt  +downstreamnt
atggctacttctgtggatatgtctcttgatgacataataaaaaggaatcgtgagagaggt
agagggcgtggcaggccccgacgcggccgtggcccaggtgggcctcccaatggtggaagg
atggcaggagcaattcgtaaaggtcctctttctgtgaatgctcggccatcacaatacaca
attgccaagcctccacgcagaatcaggagtttaccttggcagtatgatttgcttgaagat
agcattagagctgcagggataactggagcagaaggtggtgccaagttatatgtttcaaat
ttggattatggagtgtccaatgaagatataagggagctcttctctgagattggaggtctg
aaaagatatgctgttcactatgacaaaaatggtcgccctagtggttctgctgaagtagtg
tacacaagaagaagtgatgcctttgcagctttcaagaagtataacaatgtactgttagat
ggaaaacccatgaagattgaaatcatgggtacctctgcagaaatgcctttctcagctaga
gtcaatgtaactggaataaatggaaggaggaagaggacagttgttatgacgcctggacca
ggtcgcacgagaggcactgctcctccaactaaccatggttctagtcagaaccgtcgtggg
gctttgagaagtggtagaggtcgtgggcgtgggagcgggcgtggccgaggccggggtagg
aagcaaccttttttgaagtcagcagatgagcttgacaaagaattggagaactatcatgct
gacgccacgcaaacttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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