KEGG   Manihot esculenta (cassava): 110609284
Entry
110609284         CDS       T05761                                 
Name
(RefSeq) polyadenylate-binding protein 3 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03015  mRNA surveillance pathway
mesc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110609284
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110609284
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110609284
   03041 Spliceosome [BR:mesc03041]
    110609284
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110609284
   mRNA cycle factors
    Stress granule specific factors
     110609284
Spliceosome [BR:mesc03041]
 Complex C
  Other components
   Complex C specific factors
    110609284
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 RRM_7 Peripla_BP_4 Calcipressin
Other DBs
NCBI-GeneID: 110609284
NCBI-ProteinID: XP_021604442
Position
2:complement(14812254..14818188)
AA seq 652 aa
MAVAAAVAASATANASSVPATPTAAVSAVTGVAVPFVNASLYVGDLEHNVNEGQLYDLFS
QVAQVVSVRVCRDQAKRSSLGYAYVNFSNHQEAANAMEALNFTPLNGKPIRIMFSHRDPS
IRKSGYANVFIKNLDASIDNKALHDTFAVFGAVLSCKVAIDNNGQTKGYGFVQFENEDAA
QNAIKRLNGMLLNDKQVYVGLFVRRQERIQGNGSPKFTNVYVKNLSETTTDEDLKKIFGA
YGTITSAVVMKDQDGKSRCFGFVNFQNPDSAAAAAEKLNGATINDDKVLYVGRAQRKVER
EAELKAKFEQERISRYEKLKGANLYLKNLDENINDEKLKDLFAEFGSITSCKVMLDHQGL
SKGSGFVAFSTPEEASRALNEFNGKMIGRKPLYVAVAQRKEERKVRLQAQFAQIRAPGGL
SPLPSGIPGYHPGAPRLAPQQLYFGQGTPGMIPPQHAGYGFQQQLMPGVRPGVTPNYIMP
YHHIQRQGQPGQRMGMRRGGNPHQMQQHQLLHRNNNQGLRYMGNARNGRDSSSVPQGLVG
PVMPLPFEVSGNPIDIQQSVTISTLASALASASPETRNEMLGDHLYPLVKRLQPDHVAKV
TGMLLEMDQTEVLHLIESPDALKKKVAEAMQVLREAGASPVGDQLGSLGLTE
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggcggttgcggcagcggttgcggcttcggctacagcaaatgcaagttcagtgcctgct
acgcccactgcggctgtttctgctgtgacaggcgttgctgtgccgtttgtgaatgcgtct
ctctacgtcggagatctggagcataatgtgaatgagggacaattgtatgacctgtttagc
caggtagcgcaggtcgtatctgttagagtttgtagggatcaggcaaagcgatcctcgctc
ggttatgcttatgtcaatttcagtaatcaccaagaagctgcaaatgccatggaggctctg
aatttcactcctttgaatgggaagcctataaggattatgttttctcatcgagatcctagt
attagaaaaagtggatatgccaatgttttcatcaaaaacctggatgcatcaattgataac
aaggcattgcatgacacttttgctgtctttggggcagtcctttcttgcaaggtagccatt
gataacaatggtcaaaccaaagggtatggttttgtacagtttgaaaatgaggatgctgca
caaaatgcaatcaaacggttgaatggtatgttgttaaatgataaacaagtttatgttgga
ctttttgttcgacgccaagaaaggattcagggtaatggatcaccaaagtttactaatgtt
tatgttaagaacttgtctgagacaacaactgatgaggacctcaagaaaatttttggcgct
tatggtaccattaccagtgcagttgttatgaaggaccaagatgggaagtccaggtgtttt
ggttttgttaactttcagaatccagattctgctgctgcagctgctgagaagctgaacggg
gccaccatcaatgatgacaaagttttgtatgttgggagggcccaaaggaaagtagaaagg
gaagcagagttgaaagccaagtttgagcaggaaagaattagtagatatgaaaaactaaaa
ggtgcaaatttgtatctgaaaaatcttgatgagaacattaatgatgaaaagctgaaagat
ttatttgctgagtttgggtctataacatcatgcaaggtcatgcttgatcaccaagggctg
agtaagggctctggttttgttgccttttctactccagaggaagcttcaagagctttgaat
gaattcaacggaaagatgattggaaggaaacctctttatgttgctgttgcccaacgcaaa
gaagaaaggaaggttcgactgcaggcacaatttgctcaaattagagctcctggtggattg
tcacctttgccttctggaattcctggataccatccgggggcaccgaggcttgcaccacag
caactttactttggtcaagggactcctggtatgattccacctcagcatgcaggttatggc
ttccagcagcaactgatgccgggagtccgccctggtgtcactccaaattatatcatgcca
tatcaccacattcaaagacagggacaacctgggcagcgaatgggaatgcggcgtgggggc
aacccccaccagatgcaacagcatcagcttttgcaccgtaacaacaatcaaggtttaaga
tacatgggcaatgcaagaaatggcagagactcatcatctgttccacaaggtctagtggga
ccagtgatgccattgccctttgaggtctcaggaaatcctattgatattcagcaatcagtt
accatttcaactcttgcttctgctttggcatctgcttcccctgagacacgtaatgagatg
ctgggtgaccatctttatccacttgtgaagcgtcttcagccagatcatgtggcgaaggtg
actgggatgttattggagatggatcaaacagaggtactgcatctcatagagtccccagat
gctctgaaaaagaaggtggctgaagcaatgcaagtcctccgagaagctggtgcttctcca
gtcggagatcagctaggctcattgggactgactgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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