KEGG   Manihot esculenta (cassava): 110609570
Entry
110609570         CDS       T05761                                 
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
mesc  Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110609570
   03036 Chromosome and associated proteins [BR:mesc03036]
    110609570
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     110609570
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     110609570
    SLIK complex
     110609570
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C Chromo CHD1-like_C HDA2-3 ResIII DEAD SWI2_SNF2 OAM_alpha
Other DBs
NCBI-GeneID: 110609570
NCBI-ProteinID: XP_021604928
Position
2:complement(10883568..10904246)
AA seq 1755 aa
MAFFRNYTNQTVSHSVLEEKGQGQQIGRMAGNEDIDATSSEREFNINMDAQYESEGEDAC
GMQGDAATDNEGGVSNSHVQSSGRRNTAGKWGSTFWKDCRPMVAQAASDSGHEAKSDYKN
VEVSEDDVSDGMDDRLVSEDDGQKEVGRGQKGHSDVPADEMLSDEYYEQDGEDQSDSMHY
RGFNHSNGLNSRSRSVSNNFSRSSRDLNNNEEDDDGDYNNDHDADYEEEDEEDEDDPEDA
DFDPDYGVASGHAGNKDKDWDGEDSDEDDDVDNDMDVSNEDDSYYVKKPKGRQRGKGLCH
TKSARESKSFHASSLQKRGKTSFEEDEYSAEDSDSESDGDIKSMARRGAHIRKSNARSTM
STVLSGRNNEVRMSSRSVRKVSYAESEESEEIDEGKKKKPQKDETEEEDGDAIERVLWHQ
PKGMAEEALMNNQSAEPVLLSLLFDSQPDWNELEFLIKWKGQSHLHCQWKSFADLQNLSG
FKKVLNYTKKVNEDVKYRRMLTREEIEVNDVSKEMDLDLIKQNSQVERIISDRISKDSSG
NIVPEYLVKWQGLSYAEATWEKDIDIEFAQDAIDEYKGREAAMAMQGKMVDLQRKKSKES
LRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSVLGFLQN
AQQIPGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRASREVCQQYEFYNDKKVGRP
IKFNALLSTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITG
TPLQNSVEELWALLHFLDPDKFRSKDDFVQNYKNLSSFNENELANLHLELRPHILRRVIK
DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCN
HPFLFESADHGYGGDSGINDNSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRM
LDILAEYMSIRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATA
DTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLV
IQKLNAEGRLEKKEAKKGSNFDKNELSAILRFGAEELFKEDRNEEESKKRLLSMDIDEIL
ERAEKVEDEEAGGEEGHELLSAFKVANFCSAEDDGSFWSRWIKPEAVAQAEEALAPRAAR
NNKSYTEAKQSERSSKRKKKNSELLEPQERVQKRRKADHSAPSVPMIDGASAQVREWSQG
NLSKRDALRFSRAVMKFGNVNQIDLIVAEFGGSVAAAPLDAQIELFDALIDGCKEAVDGG
NLDPKGPLLDFFGVPVKANDLLNRVQQLQLLAKRISRYENPIAQFRVLMYLKPSNWSKGC
GWNQIDDARFLLGIHYHGFGNWEKIRLDERLGLSKKIAPAELQHHETFLPRAPNLRDRAN
ALLEMELAVVGGKNANVKVGRKASKKQKENIVNIPVSRTRIKKGKHSSASVSANASKNRP
QKPQRAEQLVKEEGEMSDNEELREQFKEVKWMEWCEDVMVGEIKTLRRLQRLQTTSADLP
KEKVLSKIRKYLQLIGRRIDQIVIEYEEELYRQDRMTTRLWNYVSTFSNLSGERLHQIYS
KLRQKQEEEAGVGPSHVNGSASGPVDRDGDANCFPLTRHAERQRGYKNVNAYQVSESIQK
GHDNGKFEAWKRRRRAEADTHPQFQPPLQRPMSNGARLMDPNSLGILGAAPSDNRPLRMR
QTSFPPRQNYSSGIK
NT seq 5268 nt   +upstreamnt  +downstreamnt
atggctttttttaggaactatacaaaccaaacagtttcacatagtgtactggaagaaaaa
ggccagggacagcaaattggtagaatggcggggaatgaagacatagatgctacttcaagt
gagagagaattcaatatcaatatggatgcacaatatgagagtgaaggggaagatgcttgt
gggatgcagggtgatgcagctactgacaatgaaggtggggtgagtaattcacatgttcag
tcttcaggaaggagaaatacagctggcaaatggggctcaacattctggaaggactgccga
cctatggttgctcaagcggcatctgattctgggcatgaggcaaaatcagactataaaaat
gtagaagtgtcagaggatgatgtgtcagatggaatggatgatagattagtgtcagaagat
gatgggcaaaaagaagttggtagggggcaaaagggccactcagatgtgcctgcagatgaa
atgttgtctgatgaatactatgaacaggacggggaagatcaaagtgattctatgcattac
agaggatttaaccactcaaatgggttgaattctaggtcgcgttctgttagtaataacttc
tctaggagttcaagagatttaaacaataatgaagaagacgatgatggcgactataacaat
gaccacgatgctgattacgaagaagaggatgaggaagatgaggatgatcctgaggatgca
gactttgaccctgattatggtgttgctagtggccatgcagggaacaaggataaagactgg
gatggtgaagactcagatgaagatgatgatgttgataatgacatggatgtctcaaatgaa
gatgattcatactatgtgaaaaagcccaagggtaggcaacgaggtaaaggcttatgtcat
acgaaatctgctagggaaagcaagtcatttcatgcttcaagtctacaaaagagaggaaaa
acatcatttgaagaggatgagtattcagctgaggactctgacagtgaaagtgatggagat
attaagagtatggcaaggagaggagcgcacatccgtaaatctaatgctagatccactatg
tcgacagttctcagtggaagaaataatgaggttcgcatgtctagtaggtctgttcgaaag
gtatcatatgctgaaagtgaagaaagtgaagaaattgatgaagggaagaagaaaaagccc
cagaaggatgaaaccgaagaggaagatggtgatgccattgaaagagtgctgtggcatcag
ccaaaaggcatggctgaagaagctctaatgaacaatcaatctgcggagcctgttctgtta
agcctcttgtttgattctcaaccagattggaatgaattggagtttttaatcaaatggaaa
ggccagtcacatttgcactgccagtggaaatcttttgccgatttacaaaatctgagtggt
tttaagaaggtattgaactacacaaaaaaagtgaatgaagatgtgaagtatcggagaatg
cttacacgtgaggagattgaggtcaatgatgtgagcaaggaaatggatttggatcttatc
aagcaaaatagtcaggtggagaggattatttctgaccgaatcagtaaagatagctctggt
aatattgtgccagagtacttggtcaagtggcaaggactatcttatgctgaagcaacctgg
gagaaagatatagatatagaatttgctcaagatgcaattgatgaatacaagggacgtgag
gctgcaatggccatgcaagggaaaatggtggatctccagcgcaagaaaagcaaagaaagt
ttaaggaagcttgatgaacagccagaatggttgaggggaggaaagcttcgtgattatcag
cttgagggtttgaattttcttgttaatagttggagaaatgatacaaatgtcattttagct
gatgagatgggccttgggaaaacagttcagtcagtttccgtgcttggttttttacagaat
gcacagcaaataccagggccatttcttgttgttgtaccgttatccactctgtccaactgg
gctaaagaatttaggaagtggcttcctgacatgaatgttattgtatatgttggtacacgt
gccagcagagaggtttgtcagcaatacgaattctacaatgacaaaaaggttgggaggccc
ataaaatttaatgcactattgagtacatatgaagttgttctgaaggataaggcagtcctg
tcgaagatcaaatggaattatctcatggttgacgaagcacataggttaaagaatagtgag
gcacagttgtatacaactctatcggaattcagcaccaagaacaagttgttaataactgga
actccattacagaacagcgtggaagagctatgggctctgcttcacttccttgatcctgat
aagtttaggagcaaggatgattttgttcagaattacaagaaccttagctcattcaatgaa
aatgagcttgccaatctgcatttggaattgagacctcacattctcaggagagttatcaag
gatgtagagaaatccttgccaccaaagattgagcgtattctgagggttgagatgtcccca
ctccagaaacagtattataaatggattttggaacgcaactttcatgacctaaacaaagga
gttcgtgggaatcaggtttcacttttaaatattgtagtagaattaaagaaatgctgcaat
catcccttcctatttgaaagtgcagatcacggttatggtggggattctggcattaatgat
aatagcaaattggagagaattatcttgagcagtgggaagctggttatacttgacaagttg
cttgtcaggttgcatgagacaaaacatcgtgttctgattttttcgcagatggttagaatg
ttagatatactggcagaatatatgtcgattaggggtttccaatttcaacggcttgatggt
agtacaaaggccgagttgcgtcagcaggctatggatcacttcaatgcacctggcagtgat
gatttctgtttcctcctttcaactcgggctggtggcctaggcatcaatcttgctacagct
gacacagtaataatatttgattcagactggaatccccaaaatgacttgcaggcaatgagt
agagctcataggattgggcaacaagaagtagttaacatatatagatttgtcacgagcaaa
agtgttgaggaggatatattggagcgagcaaagaaaaagatggttcttgatcatttggtg
atccaaaaattaaatgcagagggtagattggaaaagaaagaagcaaagaaagggagtaac
tttgacaaaaatgagctttctgcaattttaaggtttggtgcagaggaactgtttaaagaa
gataggaatgaagaagaaagcaagaagagattattaagtatggatattgatgaaattctt
gaaagagcagagaaagttgaagatgaggaagctggaggagaggaagggcatgaattgttg
agtgcttttaaggttgccaatttctgtagtgctgaagatgatgggagtttttggagtcgt
tggataaaacctgaagcagtagcccaagctgaagaagcattggcccctcgtgctgctagg
aacaacaagagttatactgaggctaagcaatctgagagaagtagcaaaaggaaaaagaaa
aattctgagcttctggaaccacaggagcgagtgcagaaacgtcgcaaagcagatcattct
gccccttcagttcctatgattgatggagcatctgcccaagtgagagaatggtcacaaggg
aatctgtctaagagagatgcattgcgtttttctcgtgcggttatgaaatttgggaatgtg
aaccaaatagacttaatagttgctgagtttggtgggtcagtggcagcagctccacttgat
gcacagattgagctttttgatgctctgatagatggttgcaaagaagcagttgatggagga
aatctagatccaaagggtcccttgctagactttttcggtgtccctgtgaaggctaatgat
ctgctgaaccgtgttcaacaacttcagctcctggcaaagcgaattagtcgatatgaaaac
cccattgcacaatttcgggttctaatgtatctcaaaccttcaaactggtctaagggctgt
ggctggaatcagattgatgatgcaaggtttcttttgggaatacactatcatggatttggc
aattgggaaaagataaggttggatgaaaggcttggcctgtcaaagaagattgctccagcg
gagctacaacaccatgagaccttcctgccacgtgccccaaatttgagggaccgtgctaat
gcactcctggaaatggaacttgctgtggttggtgggaagaatgctaatgtgaaggtgggt
cgtaaggcctccaagaagcaaaaggaaaacattgtcaacatcccagtatctcgcaccagg
atcaagaaaggaaaacatagttctgcatctgtcagtgccaatgccagcaagaatcgacct
cagaaacctcagagagctgaacagttggtgaaagaggagggtgaaatgtcagacaatgag
gaattacgtgagcagtttaaggaagtgaagtggatggaatggtgtgaagatgtcatggtt
ggtgaaattaaaacccttagacgtcttcaaaggcttcagactaccagtgctgatcttcca
aaggaaaaggttctttctaagattcggaaatacctacagcttattgggcggaggatagac
caaattgtcatagagtatgaggaagagctttatcggcaagataggatgactacgagatta
tggaactatgtttctaccttctcaaatttatcaggggagagacttcatcagatatattct
aaacttaggcaaaagcaggaagaggaagcgggggttggaccctcccatgtgaatggctct
gcatctggtccagtagacagagacggtgatgccaattgttttcctctaacgcgccatgct
gagaggcaaagagggtataaaaatgtgaatgcctatcaagtgtcagaatcaattcaaaag
ggtcatgataatgggaaatttgaagcatggaaacggcgaagaagagctgaagctgatact
catcctcagtttcaaccccccttgcagagaccaatgagtaatggtgcccgtttaatggat
cctaattcactgggtattcttggggctgcaccatctgataatagacctttacggatgcgc
caaacttcttttccaccaagacaaaattactcatcagggataaagtag

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