KEGG   Manihot esculenta (cassava): 110611760
Entry
110611760         CDS       T05761                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110611760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110611760
Enzymes [BR:mesc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     110611760
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     110611760
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 110611760
NCBI-ProteinID: XP_021607909
Position
3:complement(27028156..27033278)
AA seq 717 aa
MTRRWPLRAFSRMLARAYTSYSSSSTFPLKHVTKSNFEYALSELKSHVGAADFVAIDLEM
TGVTSAPWRESFEFDRFDVRYLKAKDSAEKFAIVQFGVCPFRWDDHRHSFIAHPHNFFIF
PRQELAAGGPSNEFLCQTTSMDFLARYQFDFNTCIHEGVSYLSRGQEEEALRRLNLRYEN
NGLDNLNEVRDVPVASVTDVLFCERMKNRLHEWRDWLLRNGNGGSQFQWASNHSTQQVQT
IFYKLRPALCLNGFTSHQLKLIQLVTRKHFKDLSYVRFGGETSCSQQLVVYTDSKNDRDL
LMKEVKDNYLKEAEMKIRAAIGFRHVIDLLSSAQKLIVGHNCFLDIAHIYSKFLGPLPLT
AEEFVSSINTYFPHIVDTKVLLNSNNVRLPRMKKSNTSLSSAFSLLCPQIAVNSNKNSDL
AFRPCVNVEVQVDDTRSSNWSSGVKHEAGYDAFMTGCVFAQACKNIGIDFKSHSSSENLT
HNDKLQKHINLLYLSWISGDIIDLSSGNMIAEPSGSNNFRIRRPKVLFENIVLIWRFPPR
LNASKLRECISKVFGPNSVTSVYLVDETAIFLQFSKAELVSEFLVLKESLERSNDAISVL
HPLSELLQGGNTCAAGYETYKEICSSPISKVLFAEQADAIGIRWKTKLVGSEPEAQSQEP
ESFSKENAATTAPFLSKKIEVGNKQRVIDDLLSGRSRCDEVIDSFLTAEVKQIGATN
NT seq 2154 nt   +upstreamnt  +downstreamnt
atgaccagacgttggcccctgagggcattctcacgtatgctagcacgtgcatacacctcc
tattcctcttcttcgacgttccctctgaagcatgtgaccaaatcaaacttcgagtacgca
ctctccgagctgaaaagccatgtcggtgctgctgatttcgtcgccatcgatcttgagatg
accggcgtcaccagcgctccatggcgcgagtccttcgaattcgaccgattcgatgttcgg
tacctcaaggccaaagattccgccgagaagttcgccatcgttcagttcggcgtctgtcct
ttccgctgggatgaccaccgccactccttcattgctcatccgcacaatttcttcatattt
cctcgccaagagctagcagcaggtggcccctccaatgagtttctgtgccagacgacgtcc
atggatttcttagctagatatcagttcgatttcaatacctgcatacacgaaggagtttct
tatttatctagagggcaggaagaggaagcattaagacgcttgaacttgcgatacgagaat
aatgggttagataatttgaatgaagtcagagacgtgccagtggccagtgtgactgacgtt
cttttctgtgaaagaatgaagaacagactgcatgagtggcgcgattggttattgaggaat
gggaatggggggtctcagtttcagtgggcttcaaatcactccacacaacaggtccaaacc
atattctacaagttgcggccggctctttgtctgaatggtttcacttctcatcagctcaag
ttgattcagttggtcactagaaagcattttaaagatctttcttatgttcgtttcggtggt
gaaacttcttgttcgcagcagctagtcgtatacacggactccaagaatgacagggacttg
cttatgaaagaagtgaaggataattaccttaaagaggcagagatgaaaatcagagctgca
attgggtttcgccatgttattgaccttctttcttctgcacaaaagttgattgtgggtcac
aattgctttttggatattgcacatatatacagcaaattcttaggtcctcttcctctaact
gctgaagaatttgtttcctctattaacacatactttccgcacattgttgataccaaagta
ctattgaattccaataacgtgcgccttccaaggatgaagaaatcaaacacatcactctct
tcggcgttttctttactctgtccgcaaattgctgtgaattccaataagaattctgatttg
gcatttcgtccgtgtgtgaatgtggaggttcaagtggatgatacaaggtcctccaactgg
agttctggagtgaaacatgaagctggatatgatgcttttatgacaggttgtgtctttgcc
caggcatgcaaaaatattggcattgattttaagtcccattcatcctctgagaatctgacc
cataatgacaaactccagaagcacatcaaccttctatatctcagttggatttctggggac
attattgatctaagtagtgggaatatgattgcagagccttcaggatctaataacttcaga
ataagacgtcctaaggttttgtttgagaatattgttttaatctggcgatttccacctagg
ctcaacgcaagcaagttgagagaatgcatttctaaagtctttggtccaaactctgttaca
tccgtctatcttgtggatgaaactgctatttttcttcagttcagcaaggcagagttggta
tctgaatttctagttttgaaagaatccttggagaggagtaatgatgccatttctgttttg
catcctctatcagaactgctgcaaggtggaaatacttgtgccgctggttatgaaacttat
aaggagatatgcagttcacctatctccaaagttctctttgcagagcaggcagatgcaatt
ggtatcagatggaagaccaagttggtaggatccgaaccagaggcacaatcccaggagcca
gaaagtttttctaaagaaaatgctgcgactaccgcaccatttcttagcaagaaaatcgag
gtaggcaataagcaacgtgtaatagatgatttgctgagtggccgatccagatgtgatgag
gttatcgattcctttttaactgcggaagtcaaacagattggagctactaattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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