KEGG   Manihot esculenta (cassava): 110612804
Entry
110612804         CDS       T05761                                 
Name
(RefSeq) nuclear poly(A) polymerase 4
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110612804
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110612804
Enzymes [BR:mesc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     110612804
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     110612804
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 Nrap_D2
Other DBs
NCBI-GeneID: 110612804
NCBI-ProteinID: XP_043812231
Position
4:complement(33547814..33553554)
AA seq 719 aa
MVSSEGLSSSPSPKQYGVTKPISMSGPTEADVHRSRELEKFLSDSGLYESQEEAAKRESV
LGRIGQIVKDWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYV
NREEDFFFVLHNILLEMEEVTELQPVPDAHVPVMKFKFDGISVDLLYASISLLVLPDDLD
ISDVSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGF
LGGVNWALLVARVCQLYPNAIPSMLVSRFFRVFTQWRWPNPVMLCPIEEDELGFSVWDPR
INPRDRTHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICEDIELNKAQWSTLFE
PYLFFESYKNYLQVDIVAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYAHEYV
DTSKPCAHCAFFMGLQRKQGEVIQEGQQFDIRGTVDEFRHSINMYMFWKPGMEIYVYHVR
RKQIPSYVFPDGYRRPRHPRVTAHQQSDKPCCEDGGVCHIGSGERCLKRKKDPDEVDLKN
DRLEKRCSISPQRRDSISPDIISHKFGGTSPACLAFTEGNEMCEVDKKRFCSDNVEGGCT
SNSSAITSLSSEVGSCEDNGNESVAGSSEGNNGSADGSVEGSNNLGYSQSDSGDAYSSPD
SVCHLENVCTDGSELFQDRLQEELEPSAAVGMLLKTVGRGDEAALQKTVLSRLSLTSTS
NT seq 2160 nt   +upstreamnt  +downstreamnt
atggtgagttcggagggattgagttcttccccgtcgccgaagcagtatggtgttacgaaa
ccgatatcgatgtcggggccaactgaagctgatgtacatagaagccgcgaattggagaag
ttcttgagtgattctgggctttatgagagccaagaggaagctgcaaagagggagagtgtt
ctgggtcgaattgggcagattgtaaaagattgggtgaagcagcttactcgcttgaggggg
tacacagatcaaatggtggaggatgctaacgctgtcattttcacttttggctcttaccgt
ctcggggtacatggtcctggtgctgacattgacacattatgtgttgggccatcttatgtc
aatagagaggaggacttcttctttgtattgcataacattttgttggaaatggaagaagtt
acggagctgcaaccagttcctgatgctcatgtccccgtgatgaaattcaagtttgatgga
atatcagttgatcttctttatgccagtatttctctgttggttttaccagatgacctggac
atctcggatgtttctgttctctatgatgttgatgagcctactgttcgaagtctcaatggc
tgcagggttgctgatcaaattcttaagcttgttcctaatgttgagcattttcgcacaaca
ctacggtgtttgaagttttgggctaaaagacgaggcgtttattccaatgtgactgggttt
cttggtggtgtaaactgggctctccttgttgctcgagtgtgccaactttatcctaatgca
attcccagtatgcttgtgtctagatttttcagggtatttacacaatggcgctggccaaac
cctgtcatgctgtgcccaattgaagaggatgaacttggattttctgtttgggatcctcgt
ataaatccacgtgaccgaactcatcttatgccaataataacacctgcctatccatgcatg
aattctagctacaatgtatcaacaagtacactacgggtcatgatggagcaattccagtat
ggtaacaagatctgtgaggatattgagctgaataaagcccaatggagtactctgtttgag
ccatacttgttctttgaaagctacaaaaactatctacaagttgatatagttgcagctgat
gttgatgacttgcgatcttggaaaggctgggtcgaatcccggttaaggcaattgactctt
atgattgagcgagacacatttgggaagttgcagtgtcatccatatgctcatgagtatgtg
gacacctccaagccgtgtgcccattgtgctttttttatgggcttgcagaggaaacaaggg
gaggtaattcaggaagggcagcagtttgatatccgagggactgtagatgaatttaggcat
tccataaacatgtatatgttttggaaaccgggaatggaaatttatgtctatcatgttcgt
aggaagcagatcccttcgtatgtttttccagatggttataggcgtcctcggcatcctagg
gtcacagcacatcaacagtctgataagccatgctgtgaagatggtggtgtgtgtcacatt
ggctctggagagagatgccttaagaggaaaaaggatccggatgaagtggatttgaaaaat
gataggttagagaaacgatgttctattagtcctcagaggcgggattcaatttctcctgat
attatcagtcacaagtttggtggcacatctcctgcatgcttggcctttactgaaggaaat
gaaatgtgtgaagttgataaaaagagattttgctctgacaatgttgaggggggatgtaca
tcaaattccagtgcgatcacctccctttcaagcgaggttggctcgtgtgaggataatgga
aatgaatcagtagcaggcagcagtgagggaaacaatggaagcgctgatgggagtgttgaa
ggaagtaataacctggggtattctcaaagtgattctggtgatgcatattcatctccagat
tcagtatgtcatttggaaaatgtgtgcacagatggcagtgaactatttcaagatagattg
caggaagagcttgagccaagtgctgctgttgggatgttgctaaaaacggtgggccgaggt
gatgaggcagctttgcagaaaacagtcttaagcaggttaagcttaacatcaacgtcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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