KEGG   Manihot esculenta (cassava): 110613098
Entry
110613098         CDS       T05761                                 
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03015  mRNA surveillance pathway
mesc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110613098
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110613098
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110613098
   03041 Spliceosome [BR:mesc03041]
    110613098
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110613098
   mRNA cycle factors
    Stress granule specific factors
     110613098
Spliceosome [BR:mesc03041]
 Complex C
  Other components
   Complex C specific factors
    110613098
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_5 Nup35_RRM_2 RRM_3
Other DBs
NCBI-GeneID: 110613098
NCBI-ProteinID: XP_021609728
Position
4:33604592..33609586
AA seq 597 aa
MAATPLLKPPVDLQYSLSLYVGDLDPEVTEMDLRTAFCSVCPIYTLRLCRCAYTGKSLCY
GYVNFYSHNQASEALRKLNHMYLKGKPMRLMWCQRDPYARKSGTGNLFVKNLDFSIDSAR
LESMFCKFGTILSCKVVEEYGKSKGFGFVQFDSENSALAARTALHDTMLEGKKLYVSKFI
KRSERAATTLYEESNFTNLYVKNLSDNVTEDTLHNMFSEFGKVCNVVIMKDHDGTSRGFG
FVNFHSPQGAKKAVDALNGSLLGSRTLFVGRAQKKAERIKILQHAHKDTFDNHSEKLKSN
VYVKNLDFRIDDNKLRNMFSTCGRIVSAKVMRYDNGVSRRFGFVCFSSPEEAKKALHTFN
GIMFEGKPLYVAIAQCRKDRRLELEKYIATCQPQSLYPSSSNVIAPPIGSLYYNFSTVHP
AIPFLQHPFSYQNFGANMGVQYPLGAENYQQQFYFRLGQMHQSTQNLSTQVCQPHSGRHA
ISNLRDRDLNYGYAGIQSYGPTKRWNKKGGAAGSTSRGSQATTGFAAAESNDKSKKDNYQ
QPLVENIECAGKMNEMMVNAFQVGRAAQVLKEANTLKSGDIGGMCPKSPKSACCLRF
NT seq 1794 nt   +upstreamnt  +downstreamnt
atggcggcgacaccgttactgaagccaccggtggacctgcaatacagtttgtcgctgtac
gtgggtgatttggacccagaagtcacagaaatggacctgagaactgctttttgctccgtg
tgtcccatttacacccttcgcctctgtcgctgcgcttacaccggaaagtctctttgttac
ggctacgtcaacttttactctcacaaccaagcatctgaagctctgcgtaaattaaatcat
atgtacttgaagggaaaacccatgaggttaatgtggtgtcagagggacccttacgcaaga
aagagtggcactggcaatctttttgtgaagaatctagacttttctattgatagtgctcgt
ttggagagcatgttctgcaagtttgggactatactttcttgcaaggtggttgaagaatat
ggcaagagcaagggttttgggtttgtccagtttgattcagagaattctgccttggctgct
cgaactgctcttcatgatactatgcttgaaggaaagaaactgtatgtatccaaatttatc
aagagaagtgagagggcagcaaccacgctctatgaagaatcaaactttacaaatctttat
gttaaaaatctgtctgataatgtgacggaggatacccttcataacatgttttctgaattc
ggcaaggtttgtaatgttgtcatcatgaaggatcatgatgggacttcaagaggttttgga
tttgtcaatttccattcaccacaaggtgctaagaaagctgttgatgctttaaatggttct
ttactaggttctaggactttatttgtgggaagagcccaaaagaaagctgagagaataaag
atattacaacatgcacacaaggatacttttgacaaccatagtgagaagttgaagtcaaat
gtgtatgtgaagaatcttgattttcgcattgatgacaacaaattacgaaacatgttcagt
acttgtggaaggatagtttcagcaaaggtgatgaggtatgataatggggtgagtagaaga
tttggatttgtgtgtttctcaagtcctgaagaagcaaagaaagctctgcacactttcaat
ggaatcatgtttgaggggaagcccctctacgtggcaatagctcaatgtagaaaagatcga
cgcctggaactggagaagtatattgccacatgccaacctcagtctttatatccttctagc
agcaatgttattgcacctccaattggctctctttattacaatttctctactgtacatcca
gcaatccctttccttcagcatcctttctcataccaaaattttggtgcaaatatgggagtc
cagtatcctttgggagcagagaattaccagcaacagttttattttcgattgggacaaatg
caccaaagcactcagaacctctcaacccaggtctgccaaccacattctggaagacatgct
atctcaaatcttcgtgatcgagatctgaactatgggtatgctgggattcaaagttatggc
cccacaaaaaggtggaacaaaaaaggtggagctgcaggaagtacttccagaggatcacaa
gctaccaccggttttgctgcagcggaatctaatgataagtccaagaaagacaattatcag
caacccttggttgagaatattgagtgtgcagggaagatgaatgaaatgatggtgaatgct
tttcaagttggcagggcagctcaagtgctgaaggaggctaatactttgaagagtggagat
attggtggaatgtgccccaagtctcccaagtctgcttgctgtctgaggttctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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