KEGG   Manihot esculenta (cassava): 110616334
Entry
110616334         CDS       T05761                                 
Name
(RefSeq) small nuclear ribonucleoprotein SmD1a
  KO
K11087  small nuclear ribonucleoprotein D1
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110616334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mesc03041]
    110616334
   03032 DNA replication proteins [BR:mesc03032]
    110616334
Spliceosome [BR:mesc03041]
 Complex A
  U1 snRNP components
   Sm proteins
    110616334
  U2 snRNP components
    110616334
 Complex B
  U1 snRNP components
    110616334
  U4/U6.U5 tri-snRNP components
    110616334
 Complex C
  U2 snRNP components
    110616334
DNA replication proteins [BR:mesc03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     110616334
SSDB
Motif
Pfam: LSM Gemin7
Other DBs
NCBI-GeneID: 110616334
NCBI-ProteinID: XP_021614422
Position
5:6141870..6146440
AA seq 114 aa
MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV
RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
NT seq 345 nt   +upstreamnt  +downstreamnt
atgaagcttgtcaggtttttgatgaagttgaacaacgagaccgtgtcaattgagctcaag
aatggaaccgttgttcacggcaccattacaggtgtggatatcagtatgaatactcatctg
aagactgtgaaactaacactgaaggggaaaaatccagtaaacttagatcatctcagtgtg
aggggtaacaatattcgatattatatccttcctgacagcttgaatcttgaaactttgttg
gttgaagatacacctcgggtcaaacctaagaaaccaactgctgggaggcctttgggacgt
ggtcggggccgtggacgcggtcgtggacgtggtcggggccgttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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