KEGG   Manihot esculenta (cassava): 110620314
Entry
110620314         CDS       T05761                                 
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03013  Nucleocytoplasmic transport
mesc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110620314
   03015 mRNA surveillance pathway
    110620314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110620314
   03041 Spliceosome [BR:mesc03041]
    110620314
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110620314
Spliceosome [BR:mesc03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    110620314
SSDB
Motif
Pfam: PWI Cornifin
Other DBs
NCBI-GeneID: 110620314
NCBI-ProteinID: XP_021619731
Position
1:complement(35174935..35181274)
AA seq 954 aa
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMRKVKMDVIRPWIANRVTELL
GFEDEVLINFIYGLLDAKEVNGKEVQISLTGFMEKNTGKFMKELWTLLLSAQKTDSGVPQ
QFLDAKEEETRKKQAEVDRITNEIQKKKEKEGRELEWERSKKMDGGPETKAIVAAVEQVS
KHMAKGSSADAEDVKETDNRNGVRGRNGSSRSPHSVDRSSSSPRGSPSRNSSDRHKTRSL
SRSPETQRRSVSSDRVYHSPGKRSITPRRRFSSRGSLSPSRRRYSRPRSRSSSRHMSPSP
VRRRLHSPFRRRSPSPIRRRSPSLSRRRSPSPIRRRRSPSPIRRRRSPSPIQRRRSPSPI
RRRRSPSPLRRRRSPLPLRRRSPSPVWRRSPSPMQRRSPSLIRRRSPPSRRKSPSPFRRR
YQRSPSTPHRRSPSPRRRSPLPSRRRSPLPSRQRSPSPYGSSSPSPVRYKSPSPVRKSSK
EHRRSLVQSPGERVGVREKPSPVLRRSFNSLRSPQTDPKDGKDSRVKLASLSPSPERSPV
RLESPPLSRTRNSSEDRRLTSPYESPVRQRKGTRNRSTSPYESPVRRRKGIRNRSSSPYE
SPVRQRKGIKNRSSSPSASPARQRRGHITHDDSLSPPRMPRQQKTHQESPRCRNEDENTD
HARDFKSRSSQKQSTHSSIISKQKESPVKVHSKEHSPQRVAGHRVTESRSRLDIVESRKK
EQEINSEKGSQKGAYAEIPEQQKSPTSFEEPLLGERQLPYAGEGRKSDERNHSHSNKVKD
SEKNRAHSNKVKDSDRHHKSETMPMLVEKADHSNGGGGAFDSGSEESNKRTTDDKEKRRH
KRSHREEVASDDDYSYDSEYEERKEAKRRRKEEKKLRKEEKRRRREERRRRREERRAEKL
KLKDLKDNNSSDDEFGGRMDPSDSEDAHSEQKKLEIELRKKALESLKAKKGISH
NT seq 2865 nt   +upstreamnt  +downstreamnt
atgtcgggcggtttttttcggggtacttctgcagatcaagatactcgattctcgaacaag
caagctaaattgttgaaatcgcagaagtttgctcccgaattggaacatctggtggacatg
aggaaagtgaagatggatgttatcagaccatggattgctaatagggtgacagagcttctt
ggatttgaagatgaagttcttattaactttatttatggtctccttgatgcaaaggaagtt
aatggaaaggaggttcaaatatcacttacgggatttatggagaaaaacactggaaagttt
atgaaggagctttggacccttcttctcagtgcacaaaagactgatagtggtgttccccag
caattcttggatgccaaagaagaggaaacacggaagaagcaggcagaggtggataggata
acaaatgaaattcagaagaagaaagagaaggagggtagagaacttgagtgggagagatca
aagaagatggacggtgggcctgaaacaaaggccattgttgctgctgtggagcaagtctca
aagcatatggcaaaggggtcaagtgctgatgcagaggatgtgaaagaaactgataatagg
aatggtgtcagaggaaggaatgggtcttctcggtctccccattcagttgatcgttcatct
tcatcccctcggggttcaccttctcgaaacagcagcgacagacacaagactaggagttta
tcaagatcaccagaaacacaaagacgatctgtttcttcagacagggtgtatcactcacca
ggaaaaagatctattacacctcgtcgaaggttttcatctcgaggctctctttctccttca
aggagaaggtattctaggccaagatcaagatcatcttcacgccacatgtcaccttctcca
gtacgacgtagattgcactctccatttagacgcagatctccttcaccaatccggcgtagg
tctccctcacttagtcgacgtagatctccctcacctattcggcgccgtagatctccctca
cccattcgacgccgtagatcaccctcacccatccaacgtcgtagatcaccctcacctatc
cgccgacgtagatctccttcaccccttcgacgtagaagatcacctctgccccttcgacga
cgatcaccttcacctgtgtggcgtagatcaccctcaccaatgcagcgtaggtcaccctca
cttattcgccggagatctcctccttcaagacgcaaatcaccctcccccttccgccgtagg
tatcagagatctccatcaactccccatcgccggtctccatcaccaagacgtagatcacct
cttccttctcgtagaagatcaccacttccttcaaggcagaggtctccttcaccttatgga
tcaagttctccttctcctgtccggtataagtctccttcacctgtaaggaaatcttcaaag
gaacataggaggtcacttgtgcaatctcctggggaaagagttggtgtacgggaaaaacca
tcccctgtgttgcgtcgatcctttaattctctaaggtctccacaaacagatccaaaggat
gggaaggattctcgtgttaaattggcatctttgtccccttcaccagagaggtctcctgtt
cgattggaatctccaccactctcaaggactaggaattctagtgaggatagaaggttaacg
agtccttatgagagccccgtgaggcaaagaaaagggacaagaaataggtcgactagtcca
tatgagagccctgtcaggcgaagaaaagggataagaaataggtccagtagtccatatgag
agtcctgtgaggcaaagaaaagggataaaaaataggtcttctagtccatctgcaagtcct
gcaaggcaaagaagggggcatattacacatgatgacagcttaagccctccacggatgcca
agacagcaaaaaactcatcaagaaagtcctcggtgtagaaatgaggatgaaaatactgat
catgctcgggattttaaatccaggtcttcacagaaacagtctacgcattcatccatcatc
agtaagcagaaagagtccccagtcaaggtccattcgaaggagcattctcctcaaagagtg
gcaggtcatcgggttactgaatctaggagccgtcttgatattgtggaatcaagaaagaaa
gagcaggaaataaatagtgagaagggttcccagaagggggcttatgctgaaattcctgag
cagcagaaatctccaacctcatttgaggagcctttgctgggagagagacaattgccttat
gcaggagagggtagaaaatctgatgagagaaaccattcacattcaaataaggtcaaggac
agtgagaaaaaccgtgcacattcaaacaaggttaaggacagtgataggcaccataaatct
gaaactatgccaatgttggtggaaaaggctgatcatagtaatggaggtggtggtgcattt
gattctggttcagaggaaagtaacaagcgcacaactgatgataaggagaagcgaaggcat
aaaagatcacatagggaggaagtggcttcagatgatgattacagctatgattctgaatat
gaagaaaggaaggaggctaagaggaggaggaaggaagaaaagaaactgcggaaggaggaa
aaacgtcggcgtcgtgaggagcgacgtcgtagaagggaagaacggcgtgcagagaagctc
aagttgaaggatttaaaagataataattcttctgatgatgaatttggagggaggatggat
ccaagtgatagtgaagatgcacattctgagcagaagaaacttgagattgagttgaggaag
aaggctcttgaatcacttaaagcaaagaagggcattagtcactaa

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