KEGG   Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2: EJ066_22310
Entry
EJ066_22310       CDS       T05904                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mesm  Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
Pathway
mesm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mesm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EJ066_22310 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesm03019]
    EJ066_22310 (rnr)
   03016 Transfer RNA biogenesis [BR:mesm03016]
    EJ066_22310 (rnr)
Enzymes [BR:mesm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EJ066_22310 (rnr)
Messenger RNA biogenesis [BR:mesm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EJ066_22310 (rnr)
Transfer RNA biogenesis [BR:mesm03016]
 Prokaryotic type
  tRNA degradation factors
   EJ066_22310 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AZN99635
UniProt: A0A3Q8Y0A4
Position
complement(4624320..4626626)
AA seq 768 aa
MARRISGRSHGDPRTADTRAKVKDDYRPSRDEILRYIAENPDRSGKRDIAKAFALRGEDR
IWLKDILRDLQDEGLLTKERKRLARVGALPHVAVLDIFGRDADGVLLAHPTEALGNGEPP
VIAIRVSRGGGGPTPGIGDRVLAKTFPTDDVTGPAYTGRVMKIFEKRTDAVLGVFRVLQD
GSFRIEPVERRQPELVVDKEFQNGAKNGDLVEVEPARASRYGLPRAKVLAVLGSLTSEKA
VSMIAIHAHDIPHIFPADVIAEAEAVKPATLAGREDWRDLPLVTIDPADAKDHDDAVFAL
SDPDDKNPGGVVVTVAIADVAAYVRYGTALDREALKRGNSVYFPDRVVPMLPERISNDLC
SLREGQDRPALAVRMTFAADGRKLRHSFHRVMMKSVAKLAYRQAQAAIDGAPDDTTGPIL
DMVLKPLWDAYAVVKRGRDTRQPLELELPERKILLKEDGTVDRVVVPERLDAHKLIEEFM
IQANVAAAETLEAKRQALVYRIHDAPSLAKQESLREFLQTLGLSLARGAQMRPNQFNGIL
DRVRGADHEGLVNEVVLRTQMQAEYSPSNIGHFGLNLKRYAHFTSPIRRYADLIVHRGLI
VALGFGAGGLTQDEAERLEEVSALISATERRAMAAERDTVDRLIAAYLAERVDDRFDARI
SGVTKSGLFVQLPQYGADGFIPVSSLDGDYYIYDETARSLFGERTGKGYQLADRVEVRLI
EVAPMAGAMRFEMLTDPKPLPGSKRSFHKAKGRARASQSRPGSRGRRR
NT seq 2307 nt   +upstreamnt  +downstreamnt
gtggcgcgcagaatctccggaagaagccatggcgatccgcgcaccgccgacacgagggcc
aaggtcaaggacgactaccggccctcccgcgacgaaatcctgcgctacatcgccgaaaac
ccggatcgctccggcaaacgcgacatcgccaaggcatttgcgctgcgcggcgaggaccgt
atctggctgaaggacattttgcgcgacctgcaggacgagggcctgctgactaaggagcgc
aagcggctcgcccgtgtcggtgccctgccccacgtcgccgtgctcgacatctttggccgc
gacgccgacggcgtgctgctggcgcacccgaccgaagccctgggcaacggcgagccgccc
gtcatcgcgatccgcgtgtcgcgcggcggcggcggcccgacaccgggcatcggcgaccgc
gtgctggccaagacctttccgaccgacgatgtgacaggccccgcctataccgggcgggtg
atgaagatcttcgagaagcgcaccgatgccgttctcggcgtctttcgggtgctgcaggac
ggcagcttccggatcgagcccgtcgaaagacgtcagccggagctggtcgtcgacaaggaa
ttccagaacggcgccaagaacggcgatctggtcgaggtcgagccggcacgggcctcccgc
tatggactgcccagagccaaggtgctggcggtgctgggttcgctgaccagcgaaaaggcg
gtctcgatgatcgccatccatgcacacgacattccgcacatcttcccggcggacgtcatt
gccgaggcggaggcggtcaagccggcgacgctggccggccgcgaggactggcgcgacctg
ccgctggtcaccatcgatccggccgacgccaaggatcatgacgacgcggtgttcgcccta
tccgatccggacgacaagaaccccggcggtgtggtcgtcaccgtggcgattgccgatgtc
gccgcctatgtgcgctatggcaccgcactcgaccgcgaggcgctgaaacgcggcaattcg
gtctatttcccggatcgcgtcgtgccgatgctgccggagcgcatctccaacgacctttgt
tcgctgcgcgaaggccaggatcgcccggcgctggcggtgcgcatgacgttcgcggccgat
ggccgcaagctcaggcattcgttccaccgcgtcatgatgaaatcggtggcgaagctcgcc
taccgccaagcgcaagccgcgatcgatggcgcgccggacgacacgaccgggccgatcctc
gacatggtgctgaagccgctgtgggatgcctacgccgtggtgaagcgcggccgtgacacg
cgccagccgctcgagcttgaattgccggagcgcaagatcctgctcaaggaggacggcacc
gtcgaccgggtcgtcgtgccggagcggctcgacgcgcacaagctgatcgaagagttcatg
atccaggccaatgtcgcggcggccgagacgctggaggcgaagcgacaggcgctggtctac
cgcatccatgacgcgccttcgctcgccaagcaggaatcgctgcgcgagttcctgcagacg
ctcggcctgtcgctggcgcgcggcgcgcagatgcggccgaaccagttcaacggcattctc
gatcgcgtccgcggcgccgatcatgaggggctggtcaacgaggtggtgctgcgcacgcag
atgcaggccgaatattcgcccagcaacatcggccatttcggcctcaatctgaagcgctac
gcgcatttcacctcgccaatccgcaggtatgccgacctgatcgtgcatcgcgggctgata
gtcgcgctcggcttcggtgcgggcgggttgacgcaggacgaggccgagcggctggaagag
gtttccgcgctgatctcggccaccgagcgccgtgccatggccgccgagcgcgacacggtc
gaccggctgatcgccgcctatctggccgagcgtgtcgacgatcgtttcgacgcgcgcatt
tcgggcgtcaccaaatcgggactatttgtccaattgccgcagtatggcgcagatggtttc
atcccggtgtcaagtctggacggcgattactatatatacgacgaaactgcccgatcgctt
ttcggagaacgcaccggcaagggctaccagcttgccgaccgcgtcgaggttcgcctgatc
gaggtggcgcctatggccggcgcgatgcgtttcgagatgctgaccgacccaaagccgctg
cccggctccaaacggtcgtttcacaaggccaaaggccgcgcccgcgcgtcgcaatcgcgt
ccaggctcgcgcggcaggagacggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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