KEGG   Methylobacterium sp. 4-46: M446_1689
Entry
M446_1689         CDS       T00679                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
met  Methylobacterium sp. 4-46
Pathway
met03030  DNA replication
met03410  Base excision repair
met03420  Nucleotide excision repair
met03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:met00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M446_1689
   03410 Base excision repair
    M446_1689
   03420 Nucleotide excision repair
    M446_1689
   03430 Mismatch repair
    M446_1689
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:met03032]
    M446_1689
   03400 DNA repair and recombination proteins [BR:met03400]
    M446_1689
Enzymes [BR:met01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     M446_1689
DNA replication proteins [BR:met03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     M446_1689
DNA repair and recombination proteins [BR:met03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     M446_1689
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     M446_1689
   MMR (mismatch excision repair)
    DNA ligase
     M446_1689
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      M446_1689
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD HHH_5 PTCB-BRCT
Other DBs
NCBI-ProteinID: ACA16182
UniProt: B0UQ51
Position
complement(1885656..1888139)
AA seq 827 aa
MAAQTTRPVEEITAEEARAAHEALSAEIAEHDRRYHGEDAPIISDAAYDSLRRRLEAIEE
RFPDLAGTGAASASVGAKASDKFAKVRHAVPMLSLGNAFADEEIEEFVERVRRFLGLPAS
ESLAVTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREVPERLAGPDVP
EICEVRGEVYLSHADFAAINARQEEAGKPLFANPRNAAAGSLRQLDPSITASRPLRFFAY
AAGEMSTWPAETQSGLIAAFRRFGLPVNPRTTRCTSVAEMLAHYRAIETERADLGYDIDG
VVYKVDSFALQRRLGFVARAPRWALAHKFPAQRAVTTIEAIEINVGRTGSLNPLARLRPV
TVGGVVVSNATLHNEDYVRGIDADGTPIRSGINIWDGFALRTDVDLSRGSDVRVGDTVVV
LRAGDVIPKVADVVLERRPADAVPYRFPEICPACGSHAVRSYNPRTGKLDSVRRCTGGLI
CPAQGQERLKHFVSRNALDIEGFGETSITTLFEAGLVRQPADLFRLDFAPLKAAIVARRQ
ALSAERALASGKAPEARKTKAKASEEDKAIRNLLAAVEARRVVPLNRFIFALGIEQVGEA
TAKALAKHFPDMPALMEGVRAAAAHQPGPDWVGLAALNRVGPTTRERLLAAAEAGETDLL
AEGTVARLSAAQKEALLEAYGSPEGVRAAVMRACRQRPGDAYRHLADDSEIGAVTTASLI
QFFSEAHNVAAVEALLAQVRTERAAPPAAAAAFSGRTVVFTGSLERMTRSEAKATAERLG
AKVSGSVSAKTDLVVAGPGAGTKLKDAEKHGVRVISEAEWLAMVEAA
NT seq 2484 nt   +upstreamnt  +downstreamnt
atggccgcacagacgacccgccccgtcgaagagatcaccgccgaggaggcgcgcgcggcg
cacgaggcgctctccgccgagatcgccgagcacgaccgccgctaccacggcgaggacgcg
ccgatcatctcggacgccgcgtacgattccctgcgccgccgcctggaggcgatcgaggag
cgcttccccgacctcgccggcacgggcgcggcctcggccagcgtcggcgccaaggcctcc
gacaagttcgccaaggtccgccacgccgtgccgatgctctccctcggcaacgccttcgcg
gacgaggagatcgaggagttcgtggagcgcgtgcgccgcttcctcggcctgcccgcctcc
gagtccctcgcggtcacggccgagccgaagatcgacgggctctccctgtccctgcgctac
gagggcgggcgcctcgtcacggcggccacccgcggcgacggcgaggtcggcgaggacgtc
accgccaacgtccgcaccatccgcgaggtcccggagaggctcgccggccccgacgtgccg
gagatctgcgaggtgcgcggcgaggtctacctctcgcacgcggatttcgccgccatcaac
gcgcgccaggaggaggcgggcaagccgctcttcgccaacccgcgcaacgccgcggcgggg
tcgctgcgccagctcgacccgagcatcaccgcctcgcggcccctgcgcttcttcgcctac
gcggcgggcgagatgtcgacctggccggccgagacgcagagcgggctgatcgcggccttc
cggcgcttcggcctgccggtgaacccgcgcacgacgcgctgcacctcggtcgccgagatg
ctcgcccattaccgcgccatcgagaccgagcgggccgatctcggctacgacatcgacggc
gtggtctacaaggtcgattccttcgccctccagcgccggctcggcttcgtcgcgcgcgcg
ccgcgctgggcgctggcccacaagttcccggcccagcgcgccgtcaccaccatcgaggcg
atcgagatcaatgtcgggcgcacgggctcgctcaacccgctggcgcggctcaggccggtg
acggtcgggggcgtggtggtgtcgaacgccaccctccacaacgaggattacgtgcgcggc
atcgacgcggacgggaccccgatccgcagcggcatcaacatctgggacgggttcgcgctc
aggaccgacgtcgacctgtcgcggggctcggacgtgcgggtcggcgacaccgtcgtggtg
ctgcgcgcgggcgacgtcatccccaaggtcgccgacgtcgtcctggagcgccgcccggcg
gacgcggtcccctaccgcttcccggagatctgcccggcctgcggcagccacgccgtccgc
tcctacaacccgcgcaccggcaagctcgattcggtgcgccgctgcaccggcggcctgatc
tgcccggcccagggccaggagcggctcaagcacttcgtctcgcgcaacgccctcgacatc
gagggcttcggcgagacctccatcaccaccctgttcgaggccgggctggtgcgccagccc
gccgacctgttccggctggacttcgcgccgctcaaggccgcgatcgtcgcccgccgccaa
gccctctcggcggagcgggccctcgcctccggcaaggcgcccgaggcccgcaagaccaag
gccaaggcgagcgaggaggacaaggcgatcaggaacctgctcgccgccgtggaggcccgg
cgggtggttcccctcaaccgcttcatcttcgcgctcggcatcgagcaggtcggcgaggcg
accgccaaggccctcgccaagcacttccccgacatgcccgccctgatggagggcgtgcgg
gcggcggccgcgcaccagccggggccggactgggtggggctcgccgcgctcaaccgggtc
ggcccgacgacgcgcgagcggcttctcgccgcggcggaagccggcgagaccgacctcctc
gccgagggcaccgtggcgcggctgagcgccgcccagaaggaggcgctcctcgaggcctat
ggcagcccggagggggtgcgcgcggccgtgatgcgggcctgccgccagcgccccggcgac
gcctaccgccacctcgcggacgacagcgagatcggggcggtgacgaccgcctcgctgatc
cagttcttctcggaggcgcacaacgtcgcggcggtcgaggcgctgctcgcgcaggtgcgg
accgagcgcgccgccccgcccgccgcggcggcggcgttcagcggccggaccgtggtcttc
accggcagcctggagcgcatgacccgcagcgaggccaaggccaccgccgagcgcctcggc
gccaaggtctcgggctcggtctcggccaagaccgacctcgtggtggcggggccgggcgcc
ggcacgaagctgaaggacgccgagaagcacggcgtgcgcgtcatctcggaggccgagtgg
ctggcgatggtggaggccgcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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