KEGG T00679: M446

Methylobacterium sp. 4-46: M446_6886

Entry

M446_6886         CDS       T00679

Name

(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily

K03088

RNA polymerase sigma-70 factor, ECF subfamily

Organism

met Methylobacterium sp. 4-46

Brite

KEGG Orthology (KO) [BR:met00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:met03021]
    M446_6886
Transcription machinery [BR:met03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     M446_6886

SSDB

Motif

Pfam:

Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF NepR HTH_28 DUF134 HTH_23

Other DBs

NCBI-ProteinID:

ACA21126

Position

7578977..7579660

AA seq 227 aa
MSFYLFGEADAASPNPPDLPPFLRDHLGKQLRAGYAAVVTGRQPQALLDLVARLEDALAK
VAATRSSFGNDVLAQVPALRRFALTLTIDATQADDLVQETLLRAWQHQRRFQAGTCLRAW
LFTILRNQFYTTCRKRRCEVEDADGMAAQKLVALAEQESGIELRETWEQLDKLPASQREA
LLLIAVQGLSYEAAARLMGCRVGTAKSRVNRARIALAEALGYERAHS

NT seq 684 nt +upstreamnt +downstreamnt
atgtcgttctatctcttcggcgaagcggatgccgcttcgcccaatcctcccgatttgccg
ccattcctgcgtgaccatctcggtaagcagttgcgtgccggctacgccgcggttgtgacc
gggcggcagcctcaagcgctgctcgacttggtcgcccggctcgaggacgcgctggctaaa
gtggcggcaacgaggtcctcgttcggcaacgacgttctggcccaggtgcctgctctgcgg
cgtttcgcgctcaccctcaccatcgacgccactcaggccgacgacctcgtccaagagacc
ctgctgcgcgcgtggcaacaccagcgccgcttccaggcgggcacctgcctccgggcatgg
ctgttcaccattctgcgcaaccagttctacacgacctgccgcaagcggcgctgcgaggtc
gaagatgctgacggtatggccgcgcagaagctggtcgctctggccgagcaggagagtggg
atcgagctgcgggagacctgggagcaactcgacaagctgcccgcgtcgcagcgcgaagcc
ctgctgctcatcgccgtccaggggctctcctacgaggcggccgcacgcctgatgggctgc
cgtgtcggcaccgcgaagagccgcgtcaatcgcgcccggatagccctggctgaagcgctg
ggctacgagcgcgcgcattcatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (14)   

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