KEGG   Methylobacterium sp. AMS5: Y590_09425
Entry
Y590_09425        CDS       T04283                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
meta  Methylobacterium sp. AMS5
Brite
KEGG Orthology (KO) [BR:meta00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:meta03032]
    Y590_09425
   03400 DNA repair and recombination proteins [BR:meta03400]
    Y590_09425
Enzymes [BR:meta01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Y590_09425
DNA replication proteins [BR:meta03032]
 Prokaryotic type
  DNA Topoisomerases
   Y590_09425
DNA repair and recombination proteins [BR:meta03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Y590_09425
SSDB
Motif
Pfam: Topoisom_I Top1B_N_bact
Other DBs
NCBI-ProteinID: AMB45119
Position
2008272..2009474
AA seq 400 aa
MLSEEAGAGVVDPREAARDAGLRYVDDSKPGLRRKRNGKGFRYIDPKGAPVRDAEEVARL
KSLAIPPAYTEVWICPHPNGHIQATGRDEKGRKQYRYHPRFREAREASKFHRIMAFAEAL
PGIRARIDADMGKRGLPREKVLATVVHLLETTLIRVGNDDYARSNKSYGLTTLRDPHVKV
AGSEMRFRFKGKSGKEWSVSVRDRRVAKIVKACQDLPGQELFQYLDGEGERRDVTSSDVN
AYLREITGEDFTAKDFRTWAGTVLAALALREFETFDNAAKAKKNLRAAIESVSSRLGNTP
TICRKCYIHPQILDCYLEGGMLLQVKEAVEGELKNDLGALRPEEAAVLSLLRARLERATK
VASKGTKIESTTKIEPPRQTGGRKARAIGTTRTSGGRRAA
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgctgtcggaggaggccggagccggcgtggtcgatccccgcgaggccgcgcgggatgcg
ggcctgcgctacgtggacgattccaagcccggcctgcggcgcaagcgcaacggcaagggc
ttccgctacatcgatccgaagggggctccggtccgcgacgcggaggaggtcgcccggctc
aaaagcctcgcgatcccgccggcctacacggaggtgtggatctgcccgcacccgaacggc
catatccaggcgaccgggcgcgacgagaaggggcgcaagcagtaccgctaccatccgcgc
tttcgcgaggcgcgcgaggcctcgaagttccaccgcatcatggccttcgccgaggcgctg
ccgggcatccgcgcgcggatcgacgccgatatgggcaagcgcggcctgccccgcgaaaag
gtgctcgccaccgtggtccacctcctggagaccacgctgatccgcgtcggcaacgacgat
tacgcccgctccaacaagagctacggcctcaccaccctgcgcgatccacatgtgaaggtg
gccggctccgagatgcgcttccgcttcaagggcaagagcggcaaggaatggtcggtctcg
gtgcgcgaccggcgcgtggccaagatcgtcaaggcctgccaggacctgcccggccaggag
ctgttccagtatctcgacggcgagggcgagcggcgcgacgtcacctcctcggacgtgaac
gcctacctgcgcgagatcacgggcgaggatttcacggcaaaagatttccgcacctgggcc
ggcacggtgctggcggctctggcgctgcgggagttcgagacattcgacaacgcggccaag
gccaagaagaacctgcgcgcggcgatcgagtcggtgtcgtcccggctcggcaacacgccg
accatctgccgcaagtgctacatccacccgcagatcctcgactgctatctcgaaggcggg
atgctgctgcaggtgaaggaggcggtcgagggcgaactcaagaacgacctcggcgcgctg
cgcccggaggaggcggcggtgctcagcctgcttcgggcccggctggaacgggcgacgaag
gtggcttccaagggtacgaagatcgagagcacgacaaagatcgagccgccgcgtcagacc
ggaggccgcaaggcgagggcgatcggcacgacgcgcacgtccggaggcagacgggcagcg
tga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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