KEGG   Methanobacterium sp. MB1: MBMB1_0159
Entry
MBMB1_0159        CDS       T02957                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
meth  Methanobacterium sp. MB1
Pathway
meth03030  DNA replication
meth03410  Base excision repair
meth03420  Nucleotide excision repair
meth03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:meth00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MBMB1_0159 (lig)
   03410 Base excision repair
    MBMB1_0159 (lig)
   03420 Nucleotide excision repair
    MBMB1_0159 (lig)
   03430 Mismatch repair
    MBMB1_0159 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:meth03032]
    MBMB1_0159 (lig)
   03400 DNA repair and recombination proteins [BR:meth03400]
    MBMB1_0159 (lig)
Enzymes [BR:meth01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MBMB1_0159 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MBMB1_0159 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MBMB1_0159 (lig)
DNA replication proteins [BR:meth03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MBMB1_0159 (lig)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MBMB1_0159 (lig)
DNA repair and recombination proteins [BR:meth03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MBMB1_0159 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     MBMB1_0159 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     MBMB1_0159 (lig)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: CDG64278
UniProt: U6EB73
Position
160712..162385
AA seq 557 aa
MLYKDLVEVYQALESTTKRLEKTDILSNFLAKVGEEEAELIPIVTLLSVGRIFPTWSEEE
LGIGSKLLMKAISQAVGVSPGEVENQVRDAGDIGLASEELYQKKSQVTLFSRPLTIKKVH
SNLVKMAEVSGNRAQFKKIDLLMELLSSASPSEAKYLTRTVLEELRVGVGEGTIRDAISQ
AFNISTEVTERAYMLTNDMGLVSFVAFTEGEEGLKKLTLKPGKPVKPMLAQLSPGIKESV
EEMGWAICETKYDGIRVQIHRHDDKIDIFTRRLENISLALPEITEYLEKSLPHEDFIVEG
EIIASRDGKPISFQYMLQRVRRKYDIDKMVSKIPLTIYLFDVLYYQRPTLDEPLKERRNI
LESIVKVEKGRVELSAQVNVHPDEIHLAQNLFEVSIKQGHEGIMIKDPHAPYMPGIRGKK
MLKLKAEPETLDLVVIGGTYGKGKRAHLIGSYLMAIRDENDQLKPLVYAATGLDDKTLLE
LSEMVEPLIESKDGRQVKITPSIIMEIAFSEIVESPESEVGYSLRFPVVKRIRNDIGLDE
IDTLDRIKSIFKNSEKS
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgttatataaagatttagtggaggtctatcaggctttggaatcaaccaccaaacgtctg
gagaaaacagatattttatccaattttctggctaaagtgggagaggaagaagcggaactt
attcctatagtaaccttactatctgtgggtagaattttccccacatggagtgaggaagaa
ttagggatagggtcaaaacttttgatgaaagctatttctcaagcagtaggtgtttctcct
ggtgaggtggaaaaccaggtgcgtgatgcaggggatataggacttgcatctgaggaacta
taccagaagaaaagtcaggtaaccctcttcagccggccgctgaccataaagaaagtgcac
agcaatctagtgaaaatggcggaggtttctggaaacagggcccagtttaaaaaaatagac
cttttaatggaattattatcatcagcctcaccttcagaggctaagtacctcacccgcacc
gtactagaagaactacgagtaggtgtaggggaagggaccatccgtgatgctatttctcaa
gcctttaacatctccactgaagtaactgaaagagcctacatgttaaccaatgatatgggc
ttggtatctttcgtggccttcacagaaggggaggaaggacttaaaaaattaactttaaaa
cctggaaaaccagttaaaccgatgctggcccagttatcccctggtattaaggaaagtgtg
gaagaaatgggatgggccatctgtgaaaccaaatatgatggtataagagttcaaattcac
cgacacgatgataaaatagatatattcacccgaagactggaaaatatcagtttagccctt
ccagaaatcacagaataccttgaaaaatccttacctcatgaagattttattgttgaggga
gaaattattgccagcagggatggaaagccaatatcattccagtacatgcttcagagggta
cgaaggaaatacgacatcgataagatggtctccaaaattcccttaaccatatatctgttt
gatgtactctactatcaacgacctactctggatgaacctctcaaggagaggaggaatata
ctggaatcaatagttaaggtggaaaaaggtagggtagaactttcagcccaagttaatgtt
catcctgatgagattcacctggcccagaatctctttgaagtttccattaaacaaggtcac
gagggcatcatgatcaaagaccctcatgccccatacatgccgggtataaggggtaaaaag
atgcttaaattaaaagccgaaccagaaaccctggatctagtggtgattggaggcacttat
ggtaagggtaaacgtgcccatttaattgggtcctacctgatggccattagggatgaaaat
gaccaactcaaacccctggtctatgctgccacaggattggatgataaaaccttattggaa
ctttcagaaatggtagaaccacttattgaaagtaaagacggtagacaggtgaagataact
ccttctataatcatggaaattgcctttagtgaaatagtggaaagtccagaatccgaagtt
ggctactcactgcgtttcccagtggttaaaaggatccgtaatgatattggtctggatgaa
attgacaccctggatagaattaaatctatcttcaaaaactcagagaaaagttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

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