KEGG   Methylibium sp. Pch-M: C1M51_07105
Entry
C1M51_07105       CDS       T05827                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
metp  Methylibium sp. Pch-M
Pathway
metp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:metp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C1M51_07105 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:metp03021]
    C1M51_07105 (rpoB)
   03400 DNA repair and recombination proteins [BR:metp03400]
    C1M51_07105 (rpoB)
Enzymes [BR:metp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C1M51_07105 (rpoB)
Transcription machinery [BR:metp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C1M51_07105 (rpoB)
DNA repair and recombination proteins [BR:metp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C1M51_07105 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: QAZ39219
UniProt: A0A4P6HA96
Position
complement(1503728..1507855)
AA seq 1375 aa
MAQATPYSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAA
FLSAFPIVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTS
QSKVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGK
LLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDN
FRLMDSGAQMEFVADRLRGEIARFDLTDKAGAVIVEKDKRITARHTRALEASGTSFISVP
EDFLVGRVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAYIS
QTLASDETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFNAR
VGRDTAEGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGL
ARIEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKR
RVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLE
TPYRRVIDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTSPE
RIQYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVERVS
AVDSGTVVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIHQR
PIVQRGDQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRY
TSIHIEELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGKVT
PKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQI
IDDELKRFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVDKY
HWFDIRPADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLA
VKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEV
HLGWAAKGIGQRIGDLLQQEAKIADVRKFLDELYNKSGGKSEGLNGLSDAEITEMATNLA
QGVPFATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFERPVTV
GYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVL
QEMLTVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELERN
NT seq 4128 nt   +upstreamnt  +downstreamnt
atggcgcaagcaaccccctacagctacaccgagcgcaagcgcatccggaagagtttcgga
aagcgcgagaacgtcttgggcgtgccctatctgctgacgatgcagaaggattcctacgtc
gccttcctgcagaaggacgtgccgccccaaaagcgcaaaccggagggcttgcaggccgcc
ttcctctccgccttcccgatcgtctcgcacaacgggttcgtggagatgaagtacatcgag
ttcaacatggccaagcctgcgttcgacacgcgggaatgccagcagcgcggcctgacctac
gccgccgcggtgcgcgccaagctgcagatgatcatctatgaccgtgaaacctcgacctcg
cagtcgaaggtggtcaaggagatcaaggagcaggaggtctacatgggcgaggtgcccctg
atgaccgactatggttccttcatcgtcaacggcaccgagcgtgtgatcgtgtctcagctg
caccgctcgccgggcgtgttcttcgagcacgacaagggcaagacccacagctcgggcaag
ttgctgttcagcgcccgcatcattccttaccgcggctcgtggctggacttcgagttcgac
ccgaaggacatcctgtacttccgcgtcgaccgccgccgcaagatgcctgtgacgatcctg
ctcaaggccatcggcctgaaccccgagcagatcctcgcgaacttcttcgtgttcgacaac
ttccgcctgatggattcgggcgcgcagatggagttcgtggccgaccggctgcgcggcgag
atcgcccgcttcgacctgaccgacaaggcgggtgccgtgatcgtcgagaaggacaagcgc
atcacggcgcgccacacgcgtgcgctggaagcgtcgggcaccagtttcatcagcgtgccg
gaagacttcctggtcggccgcgtgctggcgaagaacatggtcgacgccgacaccggcgag
atcatcgcgaaggccaacgacgaactgaccgactcgctgctgaagaagctgcgcacggcc
ggcatcaaggacatccagtgcctgtacacgaacgagctcgacatgggcgcgtacatctcg
cagacgctggcctccgacgagaccgccgacgagctggccgctcgcgtggcgatctaccgc
atgatgcgccccggcgagccgcccaccgaggacgcggtgcaggcgctgttcaaccgcctg
ttctacagcgaggacacctacgacctgtcgcgcgtcgggcgcatgaagttcaatgcccgc
gtcgggcgtgacaccgccgaaggccgcatggtgctggccaacgacgacattctcgacgtg
gtcaagatcctggtcgagctgcgcaacggccgcggtgaggtcgacgacatcgatcacctc
ggcaaccgccgtgtgcgttgcgtcggcgagctggccgagaaccagtaccgctcgggcctc
gctcgtatcgagaaggccgtgaaggagcgtctcggccaggccgagaccgaagcgctgatg
ccgcacgacctcatcaacagcaagccgatctcggccgcgctgaaggagttcttcggggcg
agccagctgtcgcagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgt
cgcgtctcggccctgggcccgggcggcctgacccgcgagcgcgctggcttcgaggtgcgc
gacgtgcacccgacccactacggtcgcgtctgcccgatcgagacgccggaaggtccgaac
atcggcctgatcaactcgctggcgctgtacgcgcagctcaacgagtacggcttcctcgag
acgccgtaccgccgtgtgatcgacagcaaggtcaccgaccagatcgactacctgtcggcc
atcgaggaaggcaagtacgtcatcgcgcaggccaatgccggtctcgacaaggacggcaag
ctgatcgacgagctggtgtcggcccgcgagagcggtgagtcggtgctgacctcgccggag
cgcatccagtacatggacgtggcgccgacgcagatcgtgtcggtggcggcctcgctggtg
cccttcctcgagcatgacgatgcgaaccgcgcgctgatgggcgcgaacatgcagcgccag
gcggtgccggtgctgcgtcccgagaaggccttcgtcggcaccggcgtcgagcgcgtctcg
gcggtcgactcgggcacggtcgtcacggccaagcgtggcggcgtggtcgactacatcgac
accaaccgcatcgtgatccgcgtcaacgacgcggaaacggtggcgggcgaagtcggcgtc
gacatctacaacctcatcaagtaccagcgctcgaaccagaacaccaacatccaccagcgc
ccgatcgtccagcgcggcgaccaggtgggcgccggcgacgtgatcgccgacggcgcgtcg
accgacatcggtgaactggcgctcggccagaacatgctggtcgcgttcatgccctggaac
ggctacaacttcgaggattcgatcctgatctcggagcgcgtggtcgccgacgaccgctac
acctcgatccacatcgaggaactggtggtgatggcgcgcgacaccaagctgggctcggag
gaaatcacccgcgatatcccgaacctgtccgagcagcagctcggccggctcgacgagtcg
ggcatcgtctacatcggtgccgaggtgaatccgggcgacgtgctggtcggcaaggtcacg
cccaagggcgagaccacgctgacgccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcctccgacgtgaaggacacctcgctgcgcgtggaccagggcaccaatggcaccgtg
atcgacgtccaggtgttcacccgcgaaggtatccagcgcgacaagcgtgcccagcagatc
atcgacgacgagctcaagcgcttccgtctggacctgaacgaccagctgcgcatcgtcgag
gccgacgccttcgaccggatcgagaagctgctggccggcaagacggccaatggcggcccg
aacaagctcgccaagggcacgccgatcgacaaggcctacctggcgagcgtcgacaagtac
cattggttcgacatccgcccggcggacgacgacatcgccaaccagctcgagtcgatcaag
aattcgctcgagcagactcgccacagcttcgacctcgccttcgaggagaagcgcaagaag
ctgacgcagggcgacgaactgccggccggcgtgctgaagatggtcaaggtctacctggcc
gtcaagcgccgcctgcagccgggcgacaagatggccggccgccacggcaacaagggcgtg
gtctccaagatcgttccggtcgaggacatgccctacatggccgacggcacgccgtgcgac
atcgtgctcaacccgctgggcgtgccctcgcggatgaacgtcggccaggtgctggaagtc
cacctcgggtgggccgccaagggcatcggccagcgcatcggcgacctgctccagcaggag
gccaagatcgccgacgtgcgcaagttcctcgacgagctgtacaacaagtcgggcggcaag
tcggaaggcctgaacggcctcagcgatgccgagatcaccgagatggcgaccaaccttgcg
cagggcgtgccgttcgcgacgccggtgttcgacggggccaccgaggaagagatccgcgcg
atgatgcacctcgcctacccggacgagatcgccgcggccaaggggctgaacgccacccgc
acccaggcgacgctgcacgacggccgcaccggcgacgccttcgagcgcccggtcacggtg
ggctacatgcacgtgctgaagctgcaccacctggtcgacgacaagatgcacgcccgttcc
accggtccgtactcgctcgtcacgcagcagccgctgggcggcaaggcgcagttcggcggc
cagcgcttcggcgagatggaagtctgggcgctggaagcctatggcgcgagctacgtgctg
caggaaatgctgaccgtgaagtcggacgacgtgaacggccgcaccaaggtgtacgaaagc
atcgtcaagggcgagcacgcgatcgaggccggcatgccggagtcgttcaacgtgctggtg
aaggaaattcgttcgctcggcatcgatatcgagctcgagcgcaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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