KEGG   Methylococcus geothermalis: GNH96_03645
Entry
GNH96_03645       CDS       T06585                                 
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
metu  Methylococcus geothermalis
Brite
KEGG Orthology (KO) [BR:metu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:metu03032]
    GNH96_03645 (topA)
   03400 DNA repair and recombination proteins [BR:metu03400]
    GNH96_03645 (topA)
Enzymes [BR:metu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     GNH96_03645 (topA)
DNA replication proteins [BR:metu03032]
 Prokaryotic type
  DNA Topoisomerases
   GNH96_03645 (topA)
DNA repair and recombination proteins [BR:metu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      GNH96_03645 (topA)
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim DNA_ligase_ZBD Toprim_4
Other DBs
NCBI-ProteinID: QJD29148
UniProt: A0A858Q5M1
Position
765272..767578
AA seq 768 aa
MAQHLVIVESPAKARTIEKYLGKSFQVYASYGHVRDLVPKEGAVDPDHDFSMKYEIIEKN
KKHVQAISKAMEKADALYLATDPDREGEAISWHLYELLKEQHVLDSKPVHRVVFHEITKR
AITEAVANPKPLSADLIHAQQARRALDYLVGFKLSPLLWKKIRRGLSAGRVQSPALRMIV
ERELEIERFESREYWTIEAAIPFEDQVLSARLTHLAGKKLEQFSIVNEEQAQAARQSLLD
QARGKLRVTKVEEKERKRNPAAPFTTSTLQQEAARKLGFTTRRTMTVAQQLYEGIDLGGE
AVGLITYMRTDSVNLAQEAIQELRALIESRYGKDNLPEQPRLYKTKSKNAQEAHEAIRPT
SAFRSPESVKAHLTPDQLKLYSLIWKRSVACQMVHATLNTVTVDFACGSTDNLFRATGST
VIHPGFMSVYREGQDDVPEESDEIYLPKLAEGQEVGLSDVIPSQHFTEPPPRYTEASLVK
ALEEYGIGRPSTYATIISTLQQRHYVELESKRFHPTDLGRVVNKFLTEHFNRYVDYNFTA
NLEDDLDAVSRGEKDWIPLMREFWGPFHTLIGEKDESLKRADVTHEAIDEKCPECGSPLS
IRLGRNGRFIGCTNYPQCKYTRNLAGKESEQAEPEVVEGRQCPKCNSPLVIKTGRYGRFI
GCSGYPACRHIEPLEKPTDTGVTCPECHQGTLTKRKSRFGKLFYSCSTYPKCSYAVWNPP
IAEACPACQWPVLTLKTTKRRGTEKVCPRKECGYATPYEGAPLTDSAA
NT seq 2307 nt   +upstreamnt  +downstreamnt
atggctcaacatctcgtcatcgtcgaatcgccggccaaagcccggacgatcgaaaaatat
ctcggcaagtctttccaggtctatgcctcctacgggcacgtgagggatttggtccccaag
gaaggcgcggtcgatccggaccacgatttttcgatgaagtacgaaatcatcgaaaagaac
aagaagcatgtgcaggcaatttccaaggccatggaaaaggccgatgcgctttacctcgcg
actgacccggaccgcgaaggcgaggcgatttcctggcatctgtacgagctgctgaaggag
cagcacgtgctcgacagcaagccggtacaccgggtggtttttcatgagatcaccaagcgc
gcaatcaccgaagcggtggctaaccctaagccgctgtcggccgatttgatccatgcccag
caggcccggcgggcgctcgattacctggtcggcttcaagctttcgcccctgttgtggaag
aagatccgccgcggcctgtcggcgggccgggtgcagagccccgcgttgcggatgatcgtg
gaacgcgagctcgaaatcgagcgcttcgaaagccgggaatactggaccatcgaggcggcg
atcccattcgaagaccaggtgctttcggcccggctgacccatctggccggcaagaagctc
gagcagttcagcatcgtcaacgaagagcaggcgcaagccgcgcggcagagtttgctggat
caggcccggggcaaattgcgggtgaccaaggtcgaggagaaggagcgcaagcgcaacccg
gcagcgcccttcaccacttcgaccctgcagcaggaagccgccaggaagctcggcttcacc
actcggcgaaccatgacggtggcgcagcagctctacgaaggcatcgacctcggcggcgag
gcggtgggcttgatcacctacatgcgcaccgattcggtgaacctcgcccaggaagcgatc
caggaattgcgtgcgctgatcgagtcgcgttacggcaaggacaacctgccggagcagccg
cgcctctacaagaccaagagcaagaatgcccaggaggcccatgaggcgatccgtccgacc
tcggcgttccgcagtccggagtcggtcaaggcgcatctgacgccggaccagctcaagctc
tacagcctgatctggaagcgcagcgtggcctgccagatggtccatgcgaccttgaacacc
gtcacggtggacttcgcctgcggcagcaccgacaacctgttccgcgccaccggctcgacc
gtgatccatccgggcttcatgtcggtgtaccgggaaggtcaggacgatgtgccggaggaa
agcgacgaaatctatctgcctaagctggcggaggggcaggaggtcggattgagcgatgtg
atcccttcgcagcatttcaccgagccgccgccgcgctataccgaggccagtctggtcaag
gcgctggaggagtatggcatcggtcggccgtcgacctacgcgaccatcatttcgacgctg
cagcagcggcattacgtcgagcttgaaagcaagcggttccatcccaccgatctggggcgg
gtggtgaacaagttcctgacggagcatttcaaccgttacgtcgactacaacttcaccgcc
aatctcgaagacgatctggacgccgtgtcgcgtggggaaaaggactggattccgctcatg
cgggaattctgggggccattccataccctgatcggcgaaaaggacgaaagcctgaaacgg
gccgatgtgacgcatgaggcgatcgacgagaaatgcccggaatgcgggagtccgctatcg
atccggctggggcgcaacgggcgcttcatcggctgcaccaactatccccagtgcaaatac
acgcgcaatctggcgggcaaggaatcggagcaggccgaacccgaagtcgtcgaagggcgg
cagtgcccgaaatgcaactcgcccctggtcatcaagacggggcgctacggccgcttcatc
ggctgcagcggctatcccgcctgccgccacatcgagccgctggagaagcccaccgatacc
ggcgtgacgtgtccggagtgccaccagggtaccttgaccaagcgcaaatcgcgcttcggc
aagctgttctattcctgctcgacctaccccaaatgcagctatgccgtatggaatccgccg
attgccgaggcttgcccggcctgccagtggccggtgctcacgctgaagaccaccaagcgc
cgcggtaccgagaaagtgtgtccgcgcaaggaatgcggctatgcgacgccgtacgagggc
gcaccgctgaccgattcggctgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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