KEGG   Phytobacter sp. MRY16-398: MRY16398_10260
Entry
MRY16398_10260    CDS       T05735                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
mety  Phytobacter sp. MRY16-398
Brite
KEGG Orthology (KO) [BR:mety00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mety03009]
    MRY16398_10260 (rlmD)
Enzymes [BR:mety01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     MRY16398_10260 (rlmD)
Ribosome biogenesis [BR:mety03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    MRY16398_10260 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Methyltransf_25 PCMT RrnaAD MTS Methyltransf_11 Cons_hypoth95 Met_10 Methyltransf_4 Methyltr_RsmB-F Methyltransf_15 Methyltransf_23 Ubie_methyltran FtsJ MetW Methyltransf_32 CMAS HXXEE
Other DBs
NCBI-ProteinID: BBE75970
UniProt: A0A348D903
Position
1090246..1091544
AA seq 432 aa
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPGLLPQETAEITLIEDKRQ
FARGEVKRRLNDSPDRVAPVCPHFGVCGGCQQQHASVALQQRSKSAALARLMKHDVEEVI
CASPWAYRRRARLSLSWQPKTQRLEMGFRKANASDIINVSRCPVLVPRLEALLAPLHTCL
ASLKAVRHLGHVELVLADNGPLMVLRHTAPLSAADREKLERFSHSEGLALFLAPESEILE
QVTGESPWYNSDGLRLTFSPRDFIQVNDGVNQQMVARALAWLDVQPDDRVLDLFCGMGNF
TLPLAKRAASVVGVEGVGELVAKGRENARQNGLQNVTFFHENLEEDVTKQPWARQGFDKI
LLDPARAGAAGVMQYIVKLAPGKVVYVSCNPATLARDSEALVNAGYQIKRLAMLDMFPHT
GHLESMVLFEHK
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggcgcaattctactctgcaaaacggcgcgtgacgacgcgtcagatcataactgtcaca
gtaaacgacctcgatccctttgggcagggggttgcgcgacataatggtaaggcgttgttt
atccccggattgttgccgcaagaaacggcggaaattactctgattgaagacaagcgacag
tttgcacgcggtgaagtaaaacgtcgtctgaacgacagtcctgaccgtgttgcgccggta
tgtcctcatttcggggtctgcggcggctgccagcagcagcatgcgagcgtggccctgcaa
cagcgcagcaaaagcgccgcccttgcccgtttaatgaagcacgatgtcgaagaggttatc
tgcgcgtcgccctgggcctatcggcgtcgggcgcgcctgagtctaagctggcagcctaaa
actcagcgtctggagatggggtttcgtaaggcaaatgccagcgacatcattaacgtctca
cgttgcccggtcctggtgccccgtcttgaggcattacttgcgcccctgcacacctgtctg
gcgagcctgaaagcggtgcgccatttggggcatgttgaactggtgttggcggataatggt
ccgctgatggttttgcgccataccgcgccgctgagtgctgctgaccgggaaaaactggaa
cgcttttcgcattccgagggactggcgctttttctggcgcccgaaagcgagatacttgaa
caggttacaggagaatctccctggtataactctgacgggctacgcttaacgttcagcccg
cgggattttattcaggtcaatgacggcgtaaatcagcaaatggttgcccgtgcgctggca
tggctggatgtgcagccggacgatcgcgtactggatcttttctgtggaatgggcaacttt
accttgccgttggcaaaaagggcggcaagcgtggtgggcgttgaaggggttggcgaactg
gtcgcgaaagggcgtgaaaatgcccgacaaaatggtttgcagaacgtgaccttttttcac
gaaaatctggaagaagatgtcacaaagcagccgtgggcgcgtcagggttttgataaaata
cttcttgatcccgcgcgtgcgggtgccgctggtgttatgcaatacattgtaaaattagcg
cccggcaaagtagtgtatgtttcctgtaatccggcgacgctcgcgcgtgacagcgaagcg
ttagtcaatgcgggttaccagattaagcggctggcgatgctggatatgttcccgcacact
gggcatctggaatccatggtgttattcgagcacaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (28)   

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