KEGG   Methylophilus sp. TWE2: ACJ67_13315
Entry
ACJ67_13315       CDS       T04002                                 
Name
(GenBank) RNA polymerase subunit sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
meu  Methylophilus sp. TWE2
Pathway
meu02020  Two-component system
meu02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:meu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ACJ67_13315
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    ACJ67_13315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:meu03021]
    ACJ67_13315
Transcription machinery [BR:meu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ACJ67_13315
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_38
Other DBs
NCBI-ProteinID: AKR44278
UniProt: A0A0K0SY93
Position
2818212..2819762
AA seq 516 aa
MKQNLQLRISQNLALTPQLQQSIRLLQLSTLELSQELETILQENPLLEMADGEEGEFEDN
SATPTEAIESVHADDANSFDLATQQEITAPAETLREDLHDELGSNEGELANLSEEFNPPE
FEDNYEEFGSTSNWDEAGRNNLDDEDSDFSRQDASNISLREHLLDQIQLAHLSQRDMTLV
KLLLDSINDDGYLEQDLQEIVEHLPLELEVELLELETALKLIQNLDPVGVGARDLRECLL
LQLQHLPSETPYLRTAMALAKDHLALLANKDFVKLRKLLSCDETALKGAQQLIRQQNPKP
GSEFATFSHDHFIQHDVVVKKIKGIWVASLNDGVIPKLRINQLYADILKRNRESSGQYLQ
SQMQEAKWMIKNIQQRFSTILRVSQAIVDRQRNFFEHGDIAMRPLVLREIAEELDLHEST
VSRVTTHKYMLTPRGVYELKYFFGSSVATDAGGSCSATAIRALIKQMVAEENPKKPLSDN
QITDTLAQQGIVVARRTIAKYRESLNIPPANLRKSL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgaagcaaaacctgcaattacgcatttcacaaaacctggcactgactccgcagctacaa
cagtctatccgtctgttacagttatccacattggagctcagccaggagctggaaaccatt
cttcaggaaaacccgttgctggagatggccgatggagaagaaggcgagtttgaggacaat
tcagcaacccctaccgaagctatcgaatcagtccatgcagacgatgccaactcgtttgac
ctggccacccagcaagaaattactgcacctgccgagacgctgcgcgaagacttacatgat
gaacttggcagcaatgaaggcgaactggccaatctcagcgaagaattcaaccctcccgaa
tttgaagataattacgaagagtttggcagcaccagcaactgggatgaggcaggccgcaac
aaccttgatgatgaggatagtgatttttcgcggcaggatgccagcaatatcagcctgcgc
gagcatttactggaccagattcaactggcgcatctgtcacagcgtgacatgacgctggtc
aagttgctgctcgacagcataaatgacgacggctaccttgagcaagacttgcaggaaatt
gttgaacacctgccgcttgagctcgaagttgagctgcttgaacttgagaccgcactcaaa
ctgatacagaacctggacccggtaggtgtcggagcccgtgacttgcgggaatgcctgtta
ttgcaactgcaacacttgccgtcagaaacgccttatttacgtacggccatggcactcgca
aaagatcatttggccctgctggccaataaagactttgtcaaattgcgcaaactgctcagt
tgcgatgaaaccgcactgaaaggagcgcaacaactcattcgccagcaaaaccccaaacct
ggcagcgaatttgccacctttagtcacgaccactttatccagcatgatgtggtagtcaaa
aaaatcaaaggtatctgggtcgcatcgctcaacgatggcgtgattcccaaactgcgtatc
aaccaactgtatgctgacatcctcaaacgcaaccgcgaaagctcaggccagtatctgcaa
agccagatgcaggaagcaaaatggatgatcaaaaatatccagcagcgcttctccaccatt
ctgcgcgtgtcgcaagcgattgtagaccgtcagcgcaacttctttgagcatggcgacatt
gccatgcggccattggtgcttcgtgaaattgccgaagagctagatttgcatgaaagcact
gtttcacgagtcaccacgcataaatatatgctcacaccgcgtggcgtttacgagctcaaa
tatttctttggcagttcggtggcaactgatgcgggcggctcttgctcggcgacggccatc
cgcgccttgatcaaacaaatggtggcagaagaaaacccgaaaaaaccgctctcggataac
cagattacagataccttggctcaacaaggcattgtggtcgcgcggcgtaccattgccaaa
taccgtgagtctttgaatattccgcccgccaatttacgcaaatcgctttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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