KEGG   Methanobacterium paludis: MSWAN_0565
Entry
MSWAN_0565        CDS       T01509                                 
Name
(GenBank) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
mew  Methanobacterium paludis
Pathway
mew03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mew00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    MSWAN_0565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mew03000]
    MSWAN_0565
   03021 Transcription machinery [BR:mew03021]
    MSWAN_0565
Transcription factors [BR:mew03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    MSWAN_0565
Transcription machinery [BR:mew03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     MSWAN_0565
  RNA polymerase III system
    TFIIIB
     MSWAN_0565
  RNA polymerase I system
    SL1/TIF-1B
     MSWAN_0565
SSDB
Motif
Pfam: TBP
Other DBs
NCBI-ProteinID: AEG17603
UniProt: F6D5I6
Position
complement(611040..611594)
AA seq 184 aa
MTDVTDVKIKVENIVASATLGKSLELPKVAPALEGVEYNVEQFPGLVYKLKEPKTAALIF
GSGKLVCTGAKSIENSIKAIHIAVDKMRSLDPDIPHEFEIKIQNIVASANLMSTLNLEAV
AMDLENTEYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTGAKSKEDAQLGVEKTKERLIE
LDLI
NT seq 555 nt   +upstreamnt  +downstreamnt
atgaccgatgtaactgatgtaaaaatcaaagttgaaaacattgtggcttccgcaacgctc
ggtaaatccttggaacttcccaaggttgcacccgcgcttgagggagtagaatacaatgtt
gaacaatttcccggcctggtttacaaacttaaagaacctaaaacagccgcattaatattt
ggatctggaaaactcgtttgtacaggtgcaaaatcaatagaaaattcaataaaggctata
cacatagctgtggacaagatgagaagtcttgaccccgacataccacacgaatttgagata
aaaatacagaacatagttgcctcagcaaaccttatgagcactcttaatctcgaggcagtt
gctatggacctggaaaacacagaatacgaacctgaacagttccccggactagtttacaga
cttggtgaaccaaaagttgttctacttttattcggttcaggaaaagtagtatgtactggc
gcaaaaagtaaagaagacgctcaacttggtgtggaaaaaaccaaagaaagactaattgaa
ctggatttgatataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

Download RDF
DBGET integrated database retrieval system